Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1071 ATGGAATTCACATTAAGAGGAGGAGAAGGTCATGGTGGTAATGGCATTACTATTAATTATGGGTATGAAACTATAAACACTTACACCACCAATAACCCTTCTTCTATGCAAAGATCAGGTCCTCCTTTGAGAGCCATAGACAGGTTTTTATGGAGCCAAAGGAGCCACCACTTCTCTCAGAATCATCATCATCATGAGCCACTTAACATTGCAAAGAACAACAATGCAAATGCTTTTGTTGAGGGTAATAATAATAATTTCTGCGGTTTTTCCAATTATGGTGGCTCAAGCTATGGGTTTCCGTGGCCAAACACTCAAGAAAAAGCAAGCTTTATTGATGGACTATTGGCAAATGATGAAGAGGCTTTGAAGTGGAGAAATATCTACCAAACAGCCACATTGTGCATCAAAAAAGATGTGCAAGTTTTGAATAAGAGTGCCAAAGTGGTGGGAAGGAGAACTAAGAAAGAGTCTTCTATGTTTTGGATCAAAGGACAGTGGACTGATGAGGAAGACAGGAAATTGATAAGGTTGGTGAAGCAATATGGTGAAAGAAAATGGGCTCAAATAGCTGAGAAATTGGATGGAAGGGCTGGAAAACAATGTAGAGAGAGATGGCATAACCATTTGCGTCCTGATATCAAGAAAGATAGTTGGAGCGAAGAAGAAGAGAGGATCTTAGTAGAGACACATTCCAAGGTTGGAAATCGTTGGGCTGAGATAGCAAAGTGCATCCCAGGAAGAACAGAAAACGCCATAAAGAACCACTGGAATGCCACAAAAAGGAGGCAGAACTCAAAGAGGAAGAACAAGAAGCCAGAGAGCTCAAATGGGAAGCCACACTCCACTATACTTGAAGACTATGTAAGAAGCAAGACATTATTGGGCATTCCCACACCCTCTAGCTCCCAAACAACACTTTCAGAGGAACCTCAAACAAACCAATTGAACAGTGTTGTGTTATCTGAACCTTCTGATGAATATTCTGTTGCCAATGATGATGAGCTACTATTCATCCATCAAATTTTCAAGGAGAATCACAATAAGCAATCATTGGTCAATGTCAATGAAGCTTCTTATAATAACTCCAAGGTTATAGGCTCAACCTTGGATTTATCTCAAGTTAATGGTGATGGTGTGAATGAAAGTGGGTTTGTGTATTCCATTCAATACCCAAATAACATGCACTTGGATGATAGTGATCTCTTCCTTCCTAGAGAGACTTATTGCAACACTGTGAATTACCTTCCTTCTGATCTCTATCCCTCTCACTTGTTGAATAATGTAGCAGCCGGTTCAACACTTCAATGTGATTATGGGAACCAAGACATGAACTTTATTGGTTTTCAGCAGGATTGTTCAGAAGGGAAGAGAGAGATGGATTTGGTAGAGATTGTTTCTTCTAATTCTCAGTTCAAAGGCTGTGATTCTGATCAAGAATATTATTGCAGCTTCTTATGA 1461 0.397 MEFTLRGGEGHGGNGITINYGYETINTYTTNNPSSMQRSGPPLRAIDRFLWSQRSHHFSQNHHHHEPLNIAKNNNANAFVEGNNNNFCGFSNYGGSSYGFPWPNTQEKASFIDGLLANDEEALKWRNIYQTATLCIKKDVQVLNKSAKVVGRRTKKESSMFWIKGQWTDEEDRKLIRLVKQYGERKWAQIAEKLDGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVETHSKVGNRWAEIAKCIPGRTENAIKNHWNATKRRQNSKRKNKKPESSNGKPHSTILEDYVRSKTLLGIPTPSSSQTTLSEEPQTNQLNSVVLSEPSDEYSVANDDELLFIHQIFKENHNKQSLVNVNEASYNNSKVIGSTLDLSQVNGDGVNESGFVYSIQYPNNMHLDDSDLFLPRETYCNTVNYLPSDLYPSHLLNNVAAGSTLQCDYGNQDMNFIGFQQDCSEGKREMDLVEIVSSNSQFKGCDSDQEYYCSFL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1071 486 Pfam Myb-like DNA-binding domain 167 224 - -
Dod08g1071 486 CDD SANT 218 261 IPR001005 -
Dod08g1071 486 MobiDBLite consensus disorder prediction 295 314 - -
Dod08g1071 486 PANTHER MYB PROTEIN-RELATED 74 444 - -
Dod08g1071 486 PANTHER MYB TRANSCRIPTION FACTOR 74 444 - -
Dod08g1071 486 CDD SANT 167 210 IPR001005 -
Dod08g1071 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 215 265 IPR017930 -
Dod08g1071 486 Gene3D - 217 284 - -
Dod08g1071 486 ProSiteProfiles Myb-like domain profile. 211 261 IPR001005 -
Dod08g1071 486 MobiDBLite consensus disorder prediction 257 284 - -
Dod08g1071 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 214 IPR017930 -
Dod08g1071 486 SUPERFAMILY Homeodomain-like 163 257 IPR009057 -
Dod08g1071 486 ProSiteProfiles Myb-like domain profile. 164 210 IPR001005 -
Dod08g1071 486 SMART sant 215 263 IPR001005 -
Dod08g1071 486 SMART sant 163 212 IPR001005 -
Dod08g1071 486 Gene3D - 163 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1071 Dod-Chr8 13657059 13660266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1071 142 471 MYB Transcription Factor Family AT5G58850 41.622 1.92e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod08g1071 Myb_DNA-bind_6 5.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1071 K09422 - aprc:113874412 417.157