Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1065 ATGGTAGAAACTTCCGACACCACCACCACCACCACCACAACAGAAGAAGACACCCACAGAATCCGCAACATGTGCATCCTCGCCCACGTGGACCACGGCAAGACAACCCTCGCCGACCACCTCATCGCCGCAGCAGGCGGCTCCCTCCTCCACCCCAAACTCGCCGGCCGCGTCCGCTTCATGGACTACCTCGACGAGGAACAGCGCCGCGCCATCACCATGAAATCCTCCTCCATCCGCCTCCACTTCTCCGACCACTCCATCAACCTCATCGACTCCCCCGGCCACATGGACTTCTGCGGCGAGGTCTCCACCGCCGCCCGCCTCAGCGACGGCGCCCTCCTCCTCGTCGACGCCGTCGAGGGCGTCCACATCCAGACCCACGCCGTCCTCCGCCAGTGCTGGATCGAGCGCCTCTCCCCTTGCCTCGTCCTCAACAAGATCGACCGCCTCATAACCGAATTGAAACTCACTCCCTCCGAGGCCTACACGCGCCTCACGCGCATCGTGCAGGAGGTGAATAACATCGTAAGCGCTTACCGTTCCGAGAAGTACCTCTCCGACGTTGATTCCCTGCTCGCGTCCGCAGGGGGTTCCGGTGAGGCCGAGTTCGGAATCGAAGATGAGCAAGACCAAGACGACGAGTTTCAGCCTCAGAAAGGGAACGTCGTTTTCGCTTGCGCATTGGACGGTTGGGGATTCGGAATTGGGAAATTCGCTGAGATTTACGCTTCGAAGCTTGGTGCTAGCGTGAACGCGTTGGTGAAAGCGCTTTGGGGTCCTTGGCATTTTAACCCTAAAACGAAGATGATTATGAGGAAGAAAGGGGTTACCGTTGGTGGTGGTGGTGGTAAGGGTGCGAAGCCTATGTTTGTTCAGTTTGTGTTGGAACCGTTGTGGCAGGTTTACCAGGGTGTTCTTGAAGGTGGTGATGTGGGGAAGGGTTTGCTTGAGAAGGTTATTAGGTCGTTTAATTTGGCTGTTCCGGCGAGGGAGCTTCAGAATAAGGATCCTAAGGCTGTGCTTCAGGCGGTTATGAGCAGGTGGCTGCCGCTTTCTGATGCGGTTTTGTCGATGGTGGTTAAGTGTATGCCGGACCCTGTCGCGGCGCAGGCATTCCGGATATCAAGGTTGATGCCGAAGAAAGTGGAGGTGGGGGTGGAGGTGGAGGAGGAGAATAGGAGGGTTTTGGAGGAGGCGGGGCGTGTGAGGAAGTCAGTGGAGGCGTGTGAATTGGGGAAGGATGCGCCGTGTGTTGCTTTTGTTTCGAAGATGTTTGCTGTGCCGCTGAAAATGCTTCCTCCCCAATTGGGGGAGAATGGGAATGGTTATGGTGATGAAGGAGAAGGCGAGTCGGATGAGTGTTTTCTGGCGTTTGCTAGGGTCTTTAGTGGGATTTTGTGTGCTGGTCAGAGAGTTTTTGTGCTTTCTGCATTGTATGATCCCTTGAAGAAGGAATCGACGCAGAAGCATGTGCAGGAGGCTGAATTGAAGTCGTTGTATTTGATGATGGGGCAAGGATTGAAAGTCGTTACATCTGCGAAAGCGGGGAATATTGTTGCCATTGGGGGACTTGGGCAGCATATATTGAAAACTGCTACTCTTAGTTCTACTAGGAACTGTTGGCCGTTTTCGAGTATGGCATTTCAAGTTGCCCCTACTTTTAGAGTTGCGATTGAGCCGTCCAACCCTGCAGATTTTGGTAAGCTCCTGGATGGCTTGAGGCTTTTGAATCGAGCAGATCCGTTTGTTGAGGTCACTGTTTCTGCTAGAGGAGAGCATGTTCTTGCTGCGGCAGGGGAAGTTCATCTTGAAAGATGCATAAAGGATTTAAAGGAGAGGTTTGCGGCAAAAGTGAGCCTGAATGTATCGCCGCCTCTTGTGGCCTACAGAGAGACCATTGAGGGGGAGCTATCCAATATGTTGGAAAATTTGAAAGCTCTTGGTAAGAGCTCAGATTATGTTGAGAAAACAACACCAAACGGAAGATGCATTGTTCGTGTGCATGTGATGAAACTTCTGCCTTCTCTTACAAAGGTGCTTGATGAAAGTTCTGATTTACTTGGTGATATTATTGTTGGAATGAAGTCAGGGCAGACAGTTAAAACTTTGAATACTCAGAGACCAAGTATTCTCGAGAATGATAATCCGGCTGAAGTGCTAAAAAAACGCATTGTGGATGCAGTGGAGAGTGATATCTTGAGCTGGAATGAGAATGATGAGGATCGCGCTGAGAAATGTAAATTGAAGTGGCTTAAGCTTTTGAGGAGGATATGGGCACTAGGACCTAGGCAGATTGGACCCAACATTCTCTTTACTCCTGATATTAAAGCAGAGAGTACTGATAGCTCTGTTCTAATACGCGGTTGTCGTCATGTATCTGATAAGTGGGGATTTGTGTCTGATTCTAGTAACGAAGACTCAGTTGCTGAGACATCTTCAAATGTGAGCCAAGCTTTGTACATGGATGCCGAGCGCCTTGAGAGTAGTGTTCTATCTGGGTTCCAACTGGCCACTGCAGCTGGACCCTTATGTGATGAACCTATGTGGGGTCTGGGATTTGTTGTTGAGGCACGCATATCTCCACTTAACGGGCAGTACGATGAATCTGAAACACACCTACAATCTGAACAGTATGGCATCTTTGCGGGGCAGGTAATTGCAACTGTCAAAGATGCGTGTAGAGCAGCTGTGCTTCAGAATAAGCCACGGCTTGTGGAAGGCATGTACTTTTGTGAATTGAATACCCCTACTGAATATTTGGGGCCCATGTATGCTGTACTTGCCCGAAGACGGGCCCGAGTGCTGAAAGAAGAGATGCAGGAAGGTTCCCCTTTCTTCACCGTGCATGCATATGTTCCTGTTTCCGAGAGCTTTGGTTTTGGGGACGAGCTTAGGAGGTGGACTTCTGGTGCTGCAAGTGCACTTCTTGTCCTTAGCCACTGGGAAGTACTCCCTGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGCTCTAGTGTTCTTCCGAATACAGCCAGAAAGTTAGTTGACACAGTCAGACGGCATAAGGGCCTTCCTGTGGAGGAAAAAGTAGTACAACATGGAACCAAGCAGAGGACACTGGCTCGTAAAGTCTGA 3141 0.5062 MVETSDTTTTTTTTEEDTHRIRNMCILAHVDHGKTTLADHLIAAAGGSLLHPKLAGRVRFMDYLDEEQRRAITMKSSSIRLHFSDHSINLIDSPGHMDFCGEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKIDRLITELKLTPSEAYTRLTRIVQEVNNIVSAYRSEKYLSDVDSLLASAGGSGEAEFGIEDEQDQDDEFQPQKGNVVFACALDGWGFGIGKFAEIYASKLGASVNALVKALWGPWHFNPKTKMIMRKKGVTVGGGGGKGAKPMFVQFVLEPLWQVYQGVLEGGDVGKGLLEKVIRSFNLAVPARELQNKDPKAVLQAVMSRWLPLSDAVLSMVVKCMPDPVAAQAFRISRLMPKKVEVGVEVEEENRRVLEEAGRVRKSVEACELGKDAPCVAFVSKMFAVPLKMLPPQLGENGNGYGDEGEGESDECFLAFARVFSGILCAGQRVFVLSALYDPLKKESTQKHVQEAELKSLYLMMGQGLKVVTSAKAGNIVAIGGLGQHILKTATLSSTRNCWPFSSMAFQVAPTFRVAIEPSNPADFGKLLDGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKERFAAKVSLNVSPPLVAYRETIEGELSNMLENLKALGKSSDYVEKTTPNGRCIVRVHVMKLLPSLTKVLDESSDLLGDIIVGMKSGQTVKTLNTQRPSILENDNPAEVLKKRIVDAVESDILSWNENDEDRAEKCKLKWLKLLRRIWALGPRQIGPNILFTPDIKAESTDSSVLIRGCRHVSDKWGFVSDSSNEDSVAETSSNVSQALYMDAERLESSVLSGFQLATAAGPLCDEPMWGLGFVVEARISPLNGQYDESETHLQSEQYGIFAGQVIATVKDACRAAVLQNKPRLVEGMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPFFTVHAYVPVSESFGFGDELRRWTSGAASALLVLSHWEVLPEDPFFVPKTEEEIEEFGDGSSVLPNTARKLVDTVRRHKGLPVEEKVVQHGTKQRTLARKV* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1065 1046 CDD EF2 22 244 - -
Dod08g1065 1046 Gene3D - 649 901 IPR014721 -
Dod08g1065 1046 SMART EFG_C_a 904 993 IPR000640 -
Dod08g1065 1046 SUPERFAMILY EF-G C-terminal domain-like 907 1005 IPR035647 -
Dod08g1065 1046 SUPERFAMILY EF-G C-terminal domain-like 551 626 IPR035647 -
Dod08g1065 1046 CDD eEF2_snRNP_like_C 907 986 - -
Dod08g1065 1046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 365 IPR027417 -
Dod08g1065 1046 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 19 258 IPR000795 GO:0003924|GO:0005525
Dod08g1065 1046 Pfam Elongation Factor G, domain III 553 621 IPR041095 -
Dod08g1065 1046 Pfam Elongation factor Tu GTP binding domain 19 315 IPR000795 GO:0003924|GO:0005525
Dod08g1065 1046 Gene3D Translation factors 367 550 - -
Dod08g1065 1046 SUPERFAMILY Translation proteins 408 547 IPR009000 -
Dod08g1065 1046 Gene3D Yeast translation eEF2 (G' domain) 236 350 - -
Dod08g1065 1046 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 14 1045 - -
Dod08g1065 1046 Pfam Elongation factor G C-terminus 905 989 IPR000640 -
Dod08g1065 1046 Gene3D - 11 215 IPR027417 -
Dod08g1065 1046 Pfam Elongation factor Tu domain 2 457 535 IPR004161 GO:0005525
Dod08g1065 1046 PANTHER - 14 1045 - -
Dod08g1065 1046 CDD aeEF2_snRNP_like_IV 625 911 - -
Dod08g1065 1046 SUPERFAMILY Ribosomal protein S5 domain 2-like 628 906 IPR020568 -
Dod08g1065 1046 CDD EF2_snRNP_III 553 625 - -
Dod08g1065 1046 CDD EF2_II 417 538 - -
Dod08g1065 1046 Gene3D - 903 1037 - -
Dod08g1065 1046 PRINTS GTP-binding elongation factor signature 69 77 IPR000795 GO:0003924|GO:0005525
Dod08g1065 1046 PRINTS GTP-binding elongation factor signature 23 36 IPR000795 GO:0003924|GO:0005525
Dod08g1065 1046 PRINTS GTP-binding elongation factor signature 89 99 IPR000795 GO:0003924|GO:0005525
Dod08g1065 1046 PRINTS GTP-binding elongation factor signature 105 116 IPR000795 GO:0003924|GO:0005525
Dod08g1065 1046 PRINTS GTP-binding elongation factor signature 141 150 IPR000795 GO:0003924|GO:0005525
Dod08g1065 1046 Gene3D Elongation Factor G (Translational Gtpase), domain 3 552 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1065 Dod-Chr8 13456211 13462000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1065 15 1046 Eukaryotic Initiation Factors Gene Family AT3G22980 69.009 0.0 1422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1065 K14536 - pvu:PHAVU_003G003900g 1613.59