Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1056 ATGTGCAGTGGTTCCAAGAGGAAACCTTCTCAAACTGGTTTGGTCATGGGGGATGAGTGTGGAAAACAACAAGGGCTTCACCATAAAATTTCTGCTTTGCTAGAATTCTCGGCTGCCGATGATCTAGCTGGTTTCAAAGATGCTGTTGAGAAAGAGGGTCATGATGTTGATGAGGCGGGGCTGTGGTATGGAAGGAGGGTTGGCTCAAAGAAAATGGGTTATGAAGAGAGGACCCCTCTCATGGTTGCTGCTATGTTTGGAAGCCTGAAAGTATCAACTTATATTCTCGGAACGGGTCGTGTTGATGTTAACCGGGCTAGTGCCTCAGATGGGGCTACTGCCCTTCATTGTGCTGTTGCTGGTGGTTCTGCTGCCTCCCTTGAGGTTGTCAAGCTTTTGCTTGATGCATCGGCCGATGTTAGCGCCGTTGATTCAAACGGTAACCGCCCTCGTGATTTGGTTATCTCTGTTGCCAATTCTGTCCCCAATTCAAGGAAGAGGATACTACTAGAAGCTTTGCTGGAAGGTACAGTTGGTACCGACCAGGCTTGTCTTACATCTGAGGAATTTGTTGGTCAGATTGAGGAGCAGCGAAAGCAAGACACGAACACACCTCGCGTCTCGAAAGATGGGGCTGAGAAGAAGGATTATCCTGTTGATCACTCCCTTCCTGACATAAAGAATGGGATATATGGTACCGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCTAGGCGGCGTGATCCAAGGAAATATCATTATAGCTGTGTCCCTTGCCCTGAATTCCGGAAGGGAACATGCAGCAAAGGGGATGCTTGTGAGTATGCACATGGCATTTTCGAGTGCTGGCTTCACCCTGCGCAGTACCGGACCCGGCTTTGCAAGGATGAGGGTGCTTGCACAAGAAGAGTTTGCTTCTTTGCTCACAAGCCTGATGAACTTCGCCCTCTTTATGCTTCTACAGGTTCTGGTGTGCCTTCTCCCAGATCATATTCAGCTAGCACTTCTTCACTGGAGATGATGGGTTCAGTTAGCCCAATCACACTTGGTTCTCCTTCTGTCCTGATACCACCTGCAACAACACCACCTCTGACTCCATCTGGATCGTCGTCTCCTCTGGCCGCAGCCATGTGGCAGACTCAATCCAATGTCCCAACCCTGCAGCTGCCCAAAAGCAGATTGAAAACTGCATTAGCTGCTAGAGATATTGATTTAGATGTTGAATTGCTTGGACTCGAAAACAATCGACTTAGGAAGCAGCTAATGATGGATGAGATAGCTGCTGGTCTTTCATCCCCTTCAAGCTGGAAAAATTCCATGACTAGTAGCCCATCTTTTCCTGTTTCTTTGGGCGATCACGCCGGCGAGTTGAATAGGCTTTCAGGAGTGAAGCCTGCTAACCTTGATGACATTTTTGGGTCTCACGATCCATCGATTTTGTCTAAATTCCATGGATTCTCACTTGATCCTGCAGGAACTCAGTTACAATCTCCAACTGGAATCCAGATGCGCCAGAACATGAACCAGCACCAGCTGCGAAGCTATTCTTCCGGCCTTTCCTCTTCAAGTGTGATTGGATCGCCTTCTTTTCGGGTTGATCCGTCCGGGGATGCAGCCGCAGTGGCTTTGAATCCAAGAATTGCTGCCTTTTCAAAGAGGAGCCAGAGCTTCATTGAGCGCAGCGCGGTGAACCTGCCATTCTGA 1770 0.4847 MCSGSKRKPSQTGLVMGDECGKQQGLHHKISALLEFSAADDLAGFKDAVEKEGHDVDEAGLWYGRRVGSKKMGYEERTPLMVAAMFGSLKVSTYILGTGRVDVNRASASDGATALHCAVAGGSAASLEVVKLLLDASADVSAVDSNGNRPRDLVISVANSVPNSRKRILLEALLEGTVGTDQACLTSEEFVGQIEEQRKQDTNTPRVSKDGAEKKDYPVDHSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCSKGDACEYAHGIFECWLHPAQYRTRLCKDEGACTRRVCFFAHKPDELRPLYASTGSGVPSPRSYSASTSSLEMMGSVSPITLGSPSVLIPPATTPPLTPSGSSSPLAAAMWQTQSNVPTLQLPKSRLKTALAARDIDLDVELLGLENNRLRKQLMMDEIAAGLSSPSSWKNSMTSSPSFPVSLGDHAGELNRLSGVKPANLDDIFGSHDPSILSKFHGFSLDPAGTQLQSPTGIQMRQNMNQHQLRSYSSGLSSSSVIGSPSFRVDPSGDAAAVALNPRIAAFSKRSQSFIERSAVNLPF* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1056 589 ProSiteProfiles Zinc finger C3H1-type profile. 280 302 IPR000571 GO:0046872
Dod08g1056 589 Gene3D - 276 338 - -
Dod08g1056 589 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Dod08g1056 589 PANTHER UNKEMPT FAMILY MEMBER 20 586 IPR045234 -
Dod08g1056 589 MobiDBLite consensus disorder prediction 195 219 - -
Dod08g1056 589 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 20 586 - -
Dod08g1056 589 Gene3D - 115 172 IPR036770 -
Dod08g1056 589 Gene3D - 23 114 IPR036770 -
Dod08g1056 589 Pfam Ankyrin repeats (3 copies) 70 143 IPR002110 GO:0005515
Dod08g1056 589 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 300 IPR000571 GO:0046872
Dod08g1056 589 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Dod08g1056 589 SMART ANK_2a 75 105 IPR002110 GO:0005515
Dod08g1056 589 SMART ANK_2a 110 142 IPR002110 GO:0005515
Dod08g1056 589 SMART c3hfinal6 275 301 IPR000571 GO:0046872
Dod08g1056 589 SMART c3hfinal6 310 333 IPR000571 GO:0046872
Dod08g1056 589 SUPERFAMILY Ankyrin repeat 66 155 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1056 Dod-Chr8 13335064 13336833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1056 28 446 C2H2 Transcription Factor Family AT5G12850 47.875 6.43e-137 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod08g1056 Ank_2 1e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1056 - - aprc:113846970 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1056 08 13335064 13336833 Dod08g1056 08 13335064 13336833 ECH
Dod08g1056 08 13335064 13336833 Dod05g0541 05 7807858 7811002 ECH