Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1037 ATGCTTGCAGCCATTGTTTCTCTTCTCCTTGTCATCCTCTTCGTCCTTCTCCTTCACATCTACGCCAAGTGGTTCCTTTCTCAGTCCCAACCATCACAACTGCAACATCGCCGGCGGCGTGTCTCCAGCGTTATGGGGCCTTCTCAGTTCCACCACTTCCGCATAGAAGACTCGCCCTTTACAACCAAAGGGCTCGACTCGGCTACGGTTTCGGCGATTCCCATGTTTGTGTATGAAGCAGGGGAAACAGAGGAATTGGAATGTGTGATTTGTTTGAGCGGTTTTGAGGAGGGTGAAATTGGAAGGAGCTTGCCGAAGTGTGGCCACGCTTTTCATGTTGAATGCATTGACATGTGGCTGAGTTCTCATTCCAATTGTCCAATTTGTAGAGCTCCTATTGATTGTGGTGCCGTTGATAAGAATGATTCCCAATTGATTTATGTTCATGGGGATGATCAGGATCATGATGGTGATGGCAATGATGGTGGTGTGCTCGAGATTGTGATCGGTACTCCAAGTTATGAGATTAGTGAGAGTGAGCTTGGGAATGATAATGTTGGAGGAGGTGGAATGGTGAGTGGTGGTGTTGGTGGTTCTGTTTCAGAAACTTCATCATCTTTGTTGGGGTGCTCTTTGAAGAGAATGCTGAGCAAAGTTTTTGTATCATCCAATGTAAATGAATTAGATGGTTCACAGTGA 699 0.4621 MLAAIVSLLLVILFVLLLHIYAKWFLSQSQPSQLQHRRRRVSSVMGPSQFHHFRIEDSPFTTKGLDSATVSAIPMFVYEAGETEELECVICLSGFEEGEIGRSLPKCGHAFHVECIDMWLSSHSNCPICRAPIDCGAVDKNDSQLIYVHGDDQDHDGDGNDGGVLEIVIGTPSYEISESELGNDNVGGGGMVSGGVGGSVSETSSSLLGCSLKRMLSKVFVSSNVNELDGSQ* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1037 232 Pfam Ring finger domain 87 130 IPR001841 -
Dod08g1037 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 135 IPR013083 -
Dod08g1037 232 PANTHER RING FINGER DOMAIN-CONTAINING 1 227 - -
Dod08g1037 232 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 227 - -
Dod08g1037 232 SMART ring_2 88 129 IPR001841 -
Dod08g1037 232 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Dod08g1037 232 SUPERFAMILY RING/U-box 75 135 - -
Dod08g1037 232 CDD RING-H2_EL5_like 87 130 - -
Dod08g1037 232 SMART FANCL_C_2 84 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1037 Dod-Chr8 12994795 12995493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1037 1 151 Rapid Response to Elicitors AT3G16720 37.342 2.65e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1037 - - aprc:113874423 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1037 08 12994795 12995493 Dod08g1037 08 12994795 12995493 ECH
Dod05g0522 05 7470325 7471197 Dod08g1037 08 12994795 12995493 PCT