Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1017 ATGCAAAACCTAGAACGTTTGCTTTCTTTCTTATCGATTCTCAAGAGAGCACTTGGAAACTTGAAGAACCCTGAAAATGCTTTACGTGGAAAGTGTAATAAAGACAGATCCCTAATATCAGTAACAGCTAGAGGGAAGAAGAAGCACTTGAAGAGGCTCAAGGCTCCAAAGCATTGGATGCTTGACAAGCTTGGGGGTGCTTTTGCTCCCAAGCCATCTCCTGGGCCACACAGGCTAAGGGAGTGTATTCCAATCATCCTCATACTGCGGAACAAGCTGAAGTATGCACTTACATACCGTGAGGTCATTTCCATCCTGATGCAGCGGCTTGTTTTGGTTGATGGAAAAGTTAGAACTGATCAGAAGTACCCTGCAGGATTTATGGATGTTGTATCTACTCCTAAAACAAACGAGAACTTCCGACTCCTATACGATGCCAAGAGTCGCTTTCGCCTGCGCACCATAAGGGAGGATGAAGCAAAGTTCAAGCTGTGCAAGGTGCGATCAGTACAATTTGGGAAAAGGGGCATCCCACATCTAAACGCTTACGATGGTCGAACAATTAGGTACCCTGACCCACTAATCAAAGCCAATGATACCATCAAGCTGGACCTAGAGACCTATAAGATCACCGATTTCATAAAGTTTGAAGTTGGAAACCTTGCAATGGTCACTGGTGGAAAGGAACAGAGGGAGGGTTGGAATTCTCAAGAGGAGAGAAAAGCATATGCTATTGGTAATGAGTTTGCAACTCGCATAGAGAACGTTTTCATAATTGGGCAGGGCCCAAAACCTTGGGTGTCTCTGCCAAAAGGGAAAGGCATTAAGTTGAGCATAATTGAGGAGCAAAGGTTGAGACGTCAGAGAGAAAGAGCTGCCATGGCATAA 888 0.4493 MQNLERLLSFLSILKRALGNLKNPENALRGKCNKDRSLISVTARGKKKHLKRLKAPKHWMLDKLGGAFAPKPSPGPHRLRECIPIILILRNKLKYALTYREVISILMQRLVLVDGKVRTDQKYPAGFMDVVSTPKTNENFRLLYDAKSRFRLRTIREDEAKFKLCKVRSVQFGKRGIPHLNAYDGRTIRYPDPLIKANDTIKLDLETYKITDFIKFEVGNLAMVTGGKEQREGWNSQEERKAYAIGNEFATRIENVFIIGQGPKPWVSLPKGKGIKLSIIEEQRLRRQRERAAMA* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1017 295 Pfam RS4NT (NUC023) domain 44 80 IPR013843 -
Dod08g1017 295 CDD KOW_RPS4 216 260 IPR041982 -
Dod08g1017 295 Pfam Ribosomal family S4e 136 210 IPR013845 -
Dod08g1017 295 Pfam 40S ribosomal protein S4 C-terminus 244 289 IPR032277 -
Dod08g1017 295 PANTHER 40S RIBOSOMAL PROTEIN S4 241 286 - -
Dod08g1017 295 Gene3D - 216 276 IPR014722 -
Dod08g1017 295 PANTHER 40S RIBOSOMAL PROTEIN S4 43 228 - -
Dod08g1017 295 Gene3D - 42 158 IPR036986 GO:0003723
Dod08g1017 295 Gene3D - 163 213 IPR038237 -
Dod08g1017 295 CDD S4 92 153 - -
Dod08g1017 295 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 43 228 IPR000876 GO:0003735|GO:0005840|GO:0006412
Dod08g1017 295 Hamap 30S ribosomal protein S4e [rps4e]. 48 269 IPR000876 GO:0003735|GO:0005840|GO:0006412
Dod08g1017 295 Pfam S4 domain 91 131 IPR002942 GO:0003723
Dod08g1017 295 ProSitePatterns Ribosomal protein S4e signature. 49 63 IPR018199 -
Dod08g1017 295 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 241 286 IPR000876 GO:0003735|GO:0005840|GO:0006412
Dod08g1017 295 SMART s4_6 83 147 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1017 Dod-Chr8 12665280 12667772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1017 43 293 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 70.881 2.51e-135 382