Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1013 ATGGGACGCACTTCACTGCTCAGGAGCCCAAAGAAAGAAGAACAAGAAGTACCAGAAGCTGTCTCCTCCATACTACCCTATTCTAACCAAGCATACCCAGATGAAGAATTCAATATCTTGGAGGAACTCGAAGGGGTCTTGGACATTGAACAAGACCTAAAGTTGTTAACACCACAGAACCATTGGGATTTCGTGGAATGGGAGGAATTCAAAGCCATTGGAGAGGAATTAGCAGAAGGGAAAGAGCAGGTAACAGATAACATAATTAGCAACAAGTGCCTAATGGGTGAGCAGGAGATAAAGAGAGAAAAAAATAATATTGTTGGGTTTTGGGAAGTGGATGATGAGAAGATGGTGGCTTTGAATTTGAACTTGAACTATCAAGAGGTTTTGGATGCATGGTCTGACCGTGGACCTCTATGGGCTGATGACTATTCTCCTTCAATGGCCACCAACAATGGCTATTACTATATGGGAGAAGTGCCAATATTGGAAGAAGAGAGAACAAGAAGGGAAGCAAGTGTTCTAAGGTACAAAGAGAAGCGCCAGAACAGATTGTTCTCCAAGAAGATAAGGTACCAAGTTCGGAAGCTAAACGCCGATAAAAGACCCAGAATCAAGGTCACTTTAATTTTTCCTCATTGTGCATTTTCTTTTCAAATATTGTTGGGTGTGAATGTGAGTGATTTGCAGTATGGTCACTTTTTTGTTTTCTAA 717 0.4128 MGRTSLLRSPKKEEQEVPEAVSSILPYSNQAYPDEEFNILEELEGVLDIEQDLKLLTPQNHWDFVEWEEFKAIGEELAEGKEQVTDNIISNKCLMGEQEIKREKNNIVGFWEVDDEKMVALNLNLNYQEVLDAWSDRGPLWADDYSPSMATNNGYYYMGEVPILEEERTRREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKVTLIFPHCAFSFQILLGVNVSDLQYGHFFVF* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1013 238 ProSiteProfiles CCT domain profile. 171 213 IPR010402 GO:0005515
Dod08g1013 238 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 211 - -
Dod08g1013 238 MobiDBLite consensus disorder prediction 1 20 - -
Dod08g1013 238 Pfam CCT motif 171 208 IPR010402 GO:0005515
Dod08g1013 238 MobiDBLite consensus disorder prediction 1 18 - -
Dod08g1013 238 PANTHER CCT MOTIF FAMILY PROTEIN 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1013 Dod-Chr8 12575505 12577169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1013 114 211 C2C2-CO-like Transcription Factor Family AT1G25440 41.379 3.96e-18 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod08g1013 CCT 7.7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1013 - - aprc:113847792 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1013 08 12575505 12577169 Dod08g1013 08 12575505 12577169 ECH