Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0949 ATGGGGACCAAGGTTATGAAGAAATCTATGAAGAAGAATTTGAAGAGGGCTAATGCTACTAAGCCATCATCTTCTTCCACCAACGAAGCAGACGGTCCTGAGTTTTTGCCCTTGGAAAGTGGTCCCGCTCGCAAGCTTCCCGAACAGAAGCCGCTGGAGATTGCTGCCACGGTTTTGTATGTCGGACGGATTCCACATGGGTTCTATGAGATGGAGATGAAAGGTTTTTTCGGACAATTTGGAACCATCAAGAGATTGAGAATAGCAAGAAACAAAAGGACAGGAAAAGCAAGACATTTTGGGTTCATTGAATTCGAATCTCCTGAGGTTGCAAAAGTTGTTGCTGATACTATGCACAATTATCTGCTATTTGAACACCTTCTCCAAGTTCACTTGGTACCTCCCGAGGATGTTCATCCAAAATTATGGAGAGGTTTCAGTTACCGGTACAAGCCAGTAGATGCAGTCCAAATTGAACGAGAGCGACATGACAAGGAAAGGACATTGGAAGAGCACCAGAAGTTAGTGGAAAGGATTCTGAAGCGTGACAAAAAACGGCAAAACTGTATGAAGGCTGCTGGCATTGATTACGAGTGTCCTGATATTACGGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGTAGACTAA 654 0.4373 MGTKVMKKSMKKNLKRANATKPSSSSTNEADGPEFLPLESGPARKLPEQKPLEIAATVLYVGRIPHGFYEMEMKGFFGQFGTIKRLRIARNKRTGKARHFGFIEFESPEVAKVVADTMHNYLLFEHLLQVHLVPPEDVHPKLWRGFSYRYKPVDAVQIERERHDKERTLEEHQKLVERILKRDKKRQNCMKAAGIDYECPDITGNIQPAPKKIKFVD* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0949 217 MobiDBLite consensus disorder prediction 16 31 - -
Dod08g0949 217 SMART rrm1_1 58 131 IPR000504 GO:0003723
Dod08g0949 217 Coils Coil 155 182 - -
Dod08g0949 217 Gene3D - 2 140 IPR012677 -
Dod08g0949 217 CDD RRM_NIFK_like 58 131 - -
Dod08g0949 217 SUPERFAMILY RNA-binding domain, RBD 44 146 IPR035979 GO:0003676
Dod08g0949 217 PANTHER - 1 215 - -
Dod08g0949 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 126 IPR000504 GO:0003723
Dod08g0949 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723
Dod08g0949 217 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 215 - -
Dod08g0949 217 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0949 Dod-Chr8 11731216 11734438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0949 57 130 Eukaryotic Initiation Factors Gene Family AT1G71770 35.135 3.56e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0949 K14838 - gmx:100778780 323.553