Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0945 ATGTATTACCGAATGGCAGAACAGATACTTAAGTTGTTAAAGCCAATTATTGATGCGGCTGTTGATTCTGATTTATCCACTGATGAAGTGCTTAGTAAGTTATTCAAGGAACTTTGTCAGGCAGTTGATGAGTTGAGGGATCTTTTTGAGAGCTGGCATCTATTGACCAGCAAATTTCACTTTGTTATGCAAACTGAACCCTTGATATCTAGAATTCGGGTTTCTGGGCTCAATATTTTGCAGCAGCTGAAGGTGTCACAGCAATGTCTCCCTGATGATTTGGGACGTGATACATCATCAGTCATCAAACAAGCTATTATGGAACAACTGGAAGGTGTAGGACCGCGTCCTGAGGTCCTGGCAAAGATTGCTGGGAACCTGGGCCTAAGGTCTAATCAAGATGTTCTGATGGAGGCTGTGGCCCTTGAAAAGTTGAAGGAGAATGCTGAACAAAGTGAAAAAACTGCAGAAGCTGAATATATTGATCAAATGATCTCTGTAGTAACTTGTATGCATGAGCATCTCATTATGCTTAAGCAAGCTCAGAGCACTATCCCAGTTTCAGCACCTGCTGATTTTTGTTGTCCTCTCTCTTTGGAGCTGATGATAGATCCTGTCATTGTGTCGTCAGGGCAAACCTATGAGCGGGCTTTCATCAAGGACTGGATCGATCTTGGGCTTACAGTTTGTCCAAAGACACATCAGACTCTGGTTCACACCAATCTAATTCCTAACTTTACTGTAAAAGCATTAATTGTAAACTGGTGTGAATCAAACAATGTGAAGCTAGTTGATCCCATGAAGTCCAAAAACATAAACCAACTATCTCTCCTTAATGGGTCTATGGAGTCTGGTTCAACCAAGGATTCACCTGTTATAAATCCTTTCAGTGCAAGCCACCAAGAGGAAACATTGACATTGCATCCCCAGTCAACTCCAGAAGCTTCCTTAAGTGGCATAATTGATGGGCAGCATGTGGATCGGGTAAGAATATCACCCACAGGTTTGGATGACAGGTCTGCTAGCTCAGATGATGGAAGTGTGGATTCAGTTTTCCAATCATCAATGTCGCCATCTAGAAGGGAATCATCTGATACCTTGAGCTCAGAGCAATCTCAAAACCATGTTGGAGCTGTTTCTAATTCCAGTGAAAACTCTAGTGCAAATTTTTCTCAAAGCATACAAGGTGATAGCAACAATGCTCCAACCAGTCAAGTCTACAGTCGAGATGCTTCTGAGGAATTGGATCCAGGGCCAGATGCTGCTGCCATGCCGATTCCACGTGGTGAACCTGCGTTTTCACCCCAATTGGTGGAACCAAGGTTTCAAAGCCAAACTGTATTGCAACAGTCATCAGAGAGGTTTGTTCCTAGGATAGTGTCTTCTCCTTCTATTGAAACAAGAGCTGATGTCTCTGGTATCGAAACCCAGGTTCACACATTGGTTGAGCACTTGAAGAGCTCTTCTCTTGATACTCAGAGGGAAGCCACATCAGAACTCCGCCTTCTTGCCAAGCACAGTATGGATAACCGAATTGTGATTGCAAACTGTGGAGCCATTAGCTTATTGGTTGACTTACTTCATTCAACTGATACAATGATCCAAGAAAATTCTGTTACGGCACTTCTTAACTTATCTATCAACGACAACAACAAAGCTGCAATTGCGAATGCTGGTGCAATTGAACCTCTGATTCATGTCCTTGAGACAGGGAGCCCAGAAGCAAAAGAGAATTCAGCTGCCACTCTTTACAGCTTATCAGTGACTGAGGAAAACAAGATCAGGATAGGGAGGGCTGGGGCAATTAATCCACTGGTTGATTTATTAAGGAATGGAACCCCTAGGGGTAAGAAAGATGCAGCCACTGCTTTGTTTAATTTGTCGATATTTCACGAAAACAAGGATCGGATTGTAGAAGCAGGTGCTGTGAGGCACCTTGTAGATTTAATGGACCCTGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCCACAATACCAGAAGGAAGAACCGAAATTGGTCAGGAAGGTGGCATTCCTCTTCTGGTTGAGGTTGTTGAGTTAGGTTCTGCCAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATATATGCACAAACAATCCCAGATTTTTAAACATGGTGCTCCAAGAAGGAGCTGTCCCACCACTAGTAGCTTTGTCGCGGTCAGGCACTGCAAGGGCCAAAGAAAAGGCCGTGAATCTCCTCAATCAATTTAGACTTCAAAGACATGGTGGTGCCGCGAGGGGCTGA 2286 0.4383 MYYRMAEQILKLLKPIIDAAVDSDLSTDEVLSKLFKELCQAVDELRDLFESWHLLTSKFHFVMQTEPLISRIRVSGLNILQQLKVSQQCLPDDLGRDTSSVIKQAIMEQLEGVGPRPEVLAKIAGNLGLRSNQDVLMEAVALEKLKENAEQSEKTAEAEYIDQMISVVTCMHEHLIMLKQAQSTIPVSAPADFCCPLSLELMIDPVIVSSGQTYERAFIKDWIDLGLTVCPKTHQTLVHTNLIPNFTVKALIVNWCESNNVKLVDPMKSKNINQLSLLNGSMESGSTKDSPVINPFSASHQEETLTLHPQSTPEASLSGIIDGQHVDRVRISPTGLDDRSASSDDGSVDSVFQSSMSPSRRESSDTLSSEQSQNHVGAVSNSSENSSANFSQSIQGDSNNAPTSQVYSRDASEELDPGPDAAAMPIPRGEPAFSPQLVEPRFQSQTVLQQSSERFVPRIVSSPSIETRADVSGIETQVHTLVEHLKSSSLDTQREATSELRLLAKHSMDNRIVIANCGAISLLVDLLHSTDTMIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLETGSPEAKENSAATLYSLSVTEENKIRIGRAGAINPLVDLLRNGTPRGKKDAATALFNLSIFHENKDRIVEAGAVRHLVDLMDPAAGMVDKAVAVLANLATIPEGRTEIGQEGGIPLLVEVVELGSARGKENAAAALLHICTNNPRFLNMVLQEGAVPPLVALSRSGTARAKEKAVNLLNQFRLQRHGGAARG* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0945 761 Pfam U-box domain 190 259 IPR003613 GO:0004842|GO:0016567
Dod08g0945 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Dod08g0945 761 MobiDBLite consensus disorder prediction 302 434 - -
Dod08g0945 761 Gene3D - 550 656 IPR011989 -
Dod08g0945 761 Gene3D - 657 754 IPR011989 -
Dod08g0945 761 SMART arm_5 548 588 IPR000225 GO:0005515
Dod08g0945 761 SMART arm_5 461 505 IPR000225 GO:0005515
Dod08g0945 761 SMART arm_5 630 669 IPR000225 GO:0005515
Dod08g0945 761 SMART arm_5 589 629 IPR000225 GO:0005515
Dod08g0945 761 SMART arm_5 507 547 IPR000225 GO:0005515
Dod08g0945 761 SMART arm_5 711 752 IPR000225 GO:0005515
Dod08g0945 761 SMART arm_5 670 710 IPR000225 GO:0005515
Dod08g0945 761 PANTHER U BOX DOMAIN-CONTAINING 2 757 - -
Dod08g0945 761 Gene3D - 475 549 IPR011989 -
Dod08g0945 761 MobiDBLite consensus disorder prediction 302 318 - -
Dod08g0945 761 MobiDBLite consensus disorder prediction 336 410 - -
Dod08g0945 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Dod08g0945 761 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 757 - -
Dod08g0945 761 Coils Coil 132 162 - -
Dod08g0945 761 Pfam Armadillo/beta-catenin-like repeat 548 587 IPR000225 GO:0005515
Dod08g0945 761 Pfam Armadillo/beta-catenin-like repeat 632 668 IPR000225 GO:0005515
Dod08g0945 761 Pfam Armadillo/beta-catenin-like repeat 509 546 IPR000225 GO:0005515
Dod08g0945 761 Pfam Armadillo/beta-catenin-like repeat 590 628 IPR000225 GO:0005515
Dod08g0945 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 263 IPR013083 -
Dod08g0945 761 SUPERFAMILY RING/U-box 180 266 - -
Dod08g0945 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 559 601 IPR000225 GO:0005515
Dod08g0945 761 CDD RING-Ubox_PUB 193 235 IPR045210 -
Dod08g0945 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 682 IPR000225 GO:0005515
Dod08g0945 761 SUPERFAMILY ARM repeat 477 750 IPR016024 -
Dod08g0945 761 ProSiteProfiles U-box domain profile. 188 262 IPR003613 GO:0004842|GO:0016567
Dod08g0945 761 SMART Ubox_2 192 255 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0945 Dod-Chr8 11673978 11678915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0945 149 761 U-box Gene Family AT2G23140 60.031 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0945 - - adu:107458158 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0429 05 5988245 5996047 Dod08g0945 08 11673978 11678915 PCT