Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0943 ATGTTTGGATGTCCAGAGACTGAAAGATTAGATGAGATAGCAAAGAAGGTCAAATCAGAGGCAGAAGCATCTTGTCAAATGGGGAGGAAGCATTTTTATGGCCCAGTTTCTGGGACAACCTTGAACACGGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGGAGGTGTGCTGAAGAATGCCCTTTCTCCCCTTATTTCTCACCACATGAGCCTCAAAAGTTTGCAGCAGTTCATAAAGTGTTTGGTGCAAGCAATGTCTCTAAGATGCTAATGGAGGTACCAGAGGGGCAAAGACCTGATGCTGCAAATAGCCTTGTTTATGAAGCTAACTTGAGATTGAGGGATCCAGTGTATGGATGCATGGGTGCAATATCAGCTTTGCAGCAACAAGTTCAATCACTGCAAGCAGAACTAAATGCAGTAAGGGCTGAGATACTAAAATACAAGTATAGAGAAGCTGCAAGTCTTTTTTCTTCTCATGCTGCTGCTTTGGTTATTTCTTCTGGTGGGGAAGCACCAATTAATGCTGCAAACTCATCACAACAAGGTCTTTCTCAACAACCTCCTCCTCCTCCTCCTAATCCTCCATCATCTGCTCCTCCTCCACCACCACCACCACAAAAACCATTGCCTTCACCTTCTGTTGTCCTTTCATCCTTGTCTTCATCATCAACTTCTTCTGTGTACACCCCTACCGAAAAGCACATTGAGCCATGGATCCATTACCAGTGA 735 0.4463 MFGCPETERLDEIAKKVKSEAEASCQMGRKHFYGPVSGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRPDAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKYREAASLFSSHAAALVISSGGEAPINAANSSQQGLSQQPPPPPPNPPSSAPPPPPPPQKPLPSPSVVLSSLSSSSTSSVYTPTEKHIEPWIHYQ* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0943 244 Coils Coil 125 152 - -
Dod08g0943 244 Pfam Lateral organ boundaries (LOB) domain 46 143 IPR004883 -
Dod08g0943 244 PANTHER LOB DOMAIN PROTEIN 31 198 - -
Dod08g0943 244 MobiDBLite consensus disorder prediction 214 233 - -
Dod08g0943 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 198 - -
Dod08g0943 244 MobiDBLite consensus disorder prediction 186 213 - -
Dod08g0943 244 MobiDBLite consensus disorder prediction 175 244 - -
Dod08g0943 244 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0943 Dod-Chr8 11645759 11647446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0943 12 159 AS2 family AT2G30340 72.078 4.61e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod08g0943 LOB 6.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0943 - - ccaj:109795340 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0943 08 11645759 11647446 Dod08g0943 08 11645759 11647446 ECH