Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0941 ATGGGGAGAGCTAAAGTAAAGCTTACATACATTTCTAATGACGTTGTGAGAAGGTCTACATTGAAAAATAGGAGAAGAGGATTGATGAATAAGCTCAATGAACTAACCACCCTTTGTGGGGTTGAAGCTTGTGCCATAGTGTATGAGACAAAACCCAATGATTCTCAACCTGAAGTTTGGCCCTCCCATATGGGAGTCCAAAGAGTACTTAGTAGATTCTGCAATCTATCTAGAACAAACCAAACCAAGCAGATGTCGGACCAACAATCATACTTGAAGGAAAGGGTCAAGAAGGCCAAGGAACAACTAATGAAGACAAGGAGGGCAAATAGGGAGAAGGAGATAACCCTTTGCATTCATGAGTTTGTTCAGACGGGGAAGCTTGCAGACAACTTGAACTTAGTTGATTTGAATGACCTAGCTTATGTCACTGACCAAAAGATGCAGGAGATTAATTGGCGAATGGAGCTGCTAAAGAAGGAGAATGAGCAAAAGATGAAGATGATGACAAATGGTTTTGACTCATCATCATCATCATCACCAGTTCTTTCCCTTGAGGAAAAGAACGAATGTGTTTGTGGAAGATGCTAA 591 0.4095 MGRAKVKLTYISNDVVRRSTLKNRRRGLMNKLNELTTLCGVEACAIVYETKPNDSQPEVWPSHMGVQRVLSRFCNLSRTNQTKQMSDQQSYLKERVKKAKEQLMKTRRANREKEITLCIHEFVQTGKLADNLNLVDLNDLAYVTDQKMQEINWRMELLKKENEQKMKMMTNGFDSSSSSSPVLSLEEKNECVCGRC* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0941 196 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Dod08g0941 196 CDD MADS_SRF_like 2 87 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dod08g0941 196 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 173 - -
Dod08g0941 196 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Dod08g0941 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 173 - -
Dod08g0941 196 Gene3D - 14 114 IPR036879 GO:0003677|GO:0046983
Dod08g0941 196 Coils Coil 96 116 - -
Dod08g0941 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Dod08g0941 196 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0941 Dod-Chr8 11538384 11538974 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0941 1 159 Type I MADS-box Gene Family AT5G48670 48.428 6.04e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod08g0941 SRF-TF 5.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0941 - - gmx:100813231 174.866