Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0935 ATGGCACCCCGGGCATATTCTTCTATTACACTAATTACCCTCATTGTTCTCCTTGTTGACATGCACCTGCAAGGTGCCACTGCTGACTACGGTGGCTGGCAGAGTGCACATGCAACTTTCTATGGTGGTGGTGATGCTTCTGGCACAATGGGAGGAGCATGTGGTTATGGGAATTTGTACAGTCAGGGGTATGGAACTAACACTGCAGCTCTAAGCACAGCTTTGTTCAACAATGGCTTGAGCTGTGGGGCTTGTTATGAGATGAGGTGTGCTGATGACCCAAGATGGTGCAGGCCTGGCAGCATTGTTGTTACTGCTACAAATTTTTGTCCACCAAACTTTGCTTTGGCTAACAATAATGGTGGTTGGTGCAACCCTCCTCTGCAACACTTTGATATGGCGGAACCAGCCTTCCTACAAATTGCCCAATATAGAGCTGGAATTGTGCCTGTGGAATTCAGAAGAGTGCCATGTGTGAAAAAGGGAGGAATAAGGTTCACCATCAATGGCCACTCTTACTTCAACCTGGTTTTGATCACAAACGTCGCGGGTGCTGGGGATGTCCATGCAGTGTCAATCAAAGGGTCAAGAACTGGCTGGCAAACCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTACCTCAATGGACAAAGCCTCTCTTTTCAAGTCACCGCCAGTGACGGTAGAACTGTCACAAGCTACAACGTGGCGCCAGCCAATTGGCAGTTTGGTCAGACCTTCCAAGGTGGTCAGTTTTAA 768 0.4857 MAPRAYSSITLITLIVLLVDMHLQGATADYGGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEMRCADDPRWCRPGSIVVTATNFCPPNFALANNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVEFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHAVSIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSYNVAPANWQFGQTFQGGQF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0935 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Dod08g0935 255 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Dod08g0935 255 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Dod08g0935 255 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Dod08g0935 255 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Dod08g0935 255 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Dod08g0935 255 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Dod08g0935 255 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Dod08g0935 255 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Dod08g0935 255 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Dod08g0935 255 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Dod08g0935 255 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Dod08g0935 255 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Dod08g0935 255 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Dod08g0935 255 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Dod08g0935 255 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Dod08g0935 255 Gene3D - 163 255 IPR036749 -
Dod08g0935 255 Gene3D - 18 158 IPR036908 -
Dod08g0935 255 PANTHER EXPANSIN 5 255 - -
Dod08g0935 255 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Dod08g0935 255 Pfam Lytic transglycolase 68 153 IPR009009 -
Dod08g0935 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 163 IPR007112 -
Dod08g0935 255 PANTHER EXPANSIN-A15 5 255 IPR002963 GO:0009664
Dod08g0935 255 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Dod08g0935 255 SUPERFAMILY Barwin-like endoglucanases 32 181 IPR036908 -
Dod08g0935 255 SMART dpbb_1 68 153 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0935 Dod-Chr8 11459974 11462349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0935 1 255 Expansin Gene Family AT2G40610 78.516 5.77e-150 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0935 - - gmx:100816848 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0935 08 11459974 11462349 Dod08g0935 08 11459974 11462349 ECH
Dod08g0935 08 11459974 11462349 Dod09g1715 09 38877225 38878849 ECH
Dod08g0935 08 11459974 11462349 Dod05g0420 05 5876288 5879442 ECH
Dod05g0420 05 5876288 5879442 Dod08g0935 08 11459974 11462349 PCT