Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0927 ATGTCCGTACAGTCAACACTGAAGCTTGAGAAGCTGAAGCTCTCATCACCAAGGTCAGATTTTGATGGCGAACCACCATGCAGAACAAGGCGCAAAACCCAAGAACAACAACACAAGCTGGTTCGGATCATTCTCACCGACCACGACGCCACCGATTCCGACTCATCCAGCGACGAAGAAGAGAGAGAACATAAGCCACGGAAACTGAAGAGAGAGATCACCCAAATCACCATGCACCTTCCCTCACCAGATTCCTCCACCACTTCCCCCTCCTCATCCTCATCTTCTTATTCTTCTCTTTCTTCTTCTTCTTCTCCTCCAACCTGTTGTTCCTTCTCTTCATCTTCCTCACAACAACAAAGACCAACAAAGAGACCTAAGAAACCGTCACTGCCACCGTCGTCTGAGCACCGCCGCAACAGGTTCCGCGGAATCCGAGACCCGACCCGAAGAAAACGGGTCTGGCTTGGGACCTTCGACACGGCGGAGGAGGCAGCAACAGAGTACGACAGGGCGGCGGTGAGGCTAAAGGGACCCAACGCCGTCACCAATTTTCCGGTGAGCTATCCGGAAGCGGAGAAGGCTGAGATCACGGCGGTTGATGACGGCGGCGTTTCGTTTTCCGACGCGGTGGCGCTTTCTCCGACGTCTGTTTTGCCCTACGACGGGGACATGACGCCGTTCGACGGTTTCCATTACGGCGACGTGGACGCTTTCGGGTTCGACGTCGTTGATGCGCCGTTAAGTTGGCCGGACGTTGGCGTTAACGTTATGCTGACGTGTGAGCGGTTCGAGGAGAAGGAAGAGGCTTTGTTCGGGGAGTTTGACCTTGATGAGTTTATCACGTGGCCGTACTAA 858 0.542 MSVQSTLKLEKLKLSSPRSDFDGEPPCRTRRKTQEQQHKLVRIILTDHDATDSDSSSDEEEREHKPRKLKREITQITMHLPSPDSSTTSPSSSSSSYSSLSSSSSPPTCCSFSSSSSQQQRPTKRPKKPSLPPSSEHRRNRFRGIRDPTRRKRVWLGTFDTAEEAATEYDRAAVRLKGPNAVTNFPVSYPEAEKAEITAVDDGGVSFSDAVALSPTSVLPYDGDMTPFDGFHYGDVDAFGFDVVDAPLSWPDVGVNVMLTCERFEEKEEALFGEFDLDEFITWPY* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0927 285 MobiDBLite consensus disorder prediction 13 74 - -
Dod08g0927 285 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 145 280 - -
Dod08g0927 285 MobiDBLite consensus disorder prediction 130 147 - -
Dod08g0927 285 MobiDBLite consensus disorder prediction 78 125 - -
Dod08g0927 285 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 145 280 - -
Dod08g0927 285 CDD AP2 136 188 IPR001471 GO:0003700|GO:0006355
Dod08g0927 285 Pfam AP2 domain 148 178 IPR001471 GO:0003700|GO:0006355
Dod08g0927 285 SUPERFAMILY DNA-binding domain 145 188 IPR016177 GO:0003677
Dod08g0927 285 MobiDBLite consensus disorder prediction 1 147 - -
Dod08g0927 285 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 36 87 - -
Dod08g0927 285 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 87 - -
Dod08g0927 285 Gene3D AP2/ERF domain 135 188 IPR036955 GO:0003700|GO:0006355
Dod08g0927 285 SMART rav1_2 136 192 IPR001471 GO:0003700|GO:0006355
Dod08g0927 285 PIRSF PTI6 7 285 IPR017392 GO:0003700
Dod08g0927 285 ProSiteProfiles AP2/ERF domain profile. 119 186 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0927 Dod-Chr8 11346315 11347209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0927 30 221 AP2-EREBP Transcription Factor Family AT4G27950 37.264 5.00e-23 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod08g0927 AP2 1.1e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0927 K13434 - gmx:100800489 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0927 08 11346315 11347209 Dod08g0927 08 11346315 11347209 ECH
Dod05g0393 05 5183440 5185733 Dod08g0927 08 11346315 11347209 PCT