Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0919 ATGGCAAAGGGTTGCCCAAACAACAAGTATGAAGAGGCTAGGAAGCAAAGACTTGAAGAGAACAAGAAGAGGTTTCAGGACTTGGGAATTTCAACGATTTCGAAGAATTTGACTGAAATTGCAAATTCTGCTAAGAAATCTCCGCATCGTACTCCTAGACCAAAAGCAAAGACTAATGAGGTAGTGGAACCTAGGCGTTCTTCTCGTGTACGAAATCTAGTTCCTTCATACCGTGAAGATGTTGGCATAGAACTTCCACCTTTGCGGAAGAGGTCAAGGTCAAGTCCATCATCATGGGGAAGCTACATTGCAAGGCCACTTGATGAGATAAAAGAAGCTACACATGAAGAAAGAGTTCGTGCTTTAGAGGCTGCAGAGGCACTCCAAAGCAATTTGCAGTCTACAAATCCGTCATTTGTTAAGTCAATGGTCCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTCGAAATTTTGTGAAGAACATCTTCCAAAAACTGTGCATAATATGATTTTAGAGGATGAAAATGGTTCAGAACACGAGGCTGTCTATCTTGGCAACAGAGCTGGGCTTAGTGGTGGCTGGAGAGGATTTGCATTGGAACATAAGCTGGATGATGGCGATGCACTTGTTTTTGAGTTAGTTGAAGCAGCAAGATTTAAGATTTATATTGTTAGAGCATTTCCGGATTCAACTGAAGATGGAAAGCAGATTTCTGAGGAAGAAGATAATAAGCATGCAACAAAAGCATCAAAAGCTGACAGTAATCATGAATCAGAATCCAACAAGACTAAAAGGAAAAGACAGGCCGTTGTAGATAAAGCTCATGAACTGGCAAGTTCTGAGAACAATGTGCCAGAAAGTAGCATTGATAATGAAGTCAAATCAAAGGAATTGAGCCCAAGAAAGAGAGCTAAAGTTTCTCAGAAGAAATTGCAAAAGAAATCCAAAGAGGAAGCACAAGTTGAAACTAGGAAGCCAAAAGCAGCTACAAAGCCTAAAGCAAACAAGGCAAAGGAGTCAGAAGAAAGTATTGTACGAGAAAATGGTGATTCAAGCAAGAAGAATGATGCTGGAATTGACCCAAAGGAATTTGAACCAGTTGAAGAAGGAAGCAAAGTTTCAAGAAGAAAAAAAGCAGCTCCAAAGCTCTTCAGAAAGAGGGCATAG 1176 0.4065 MAKGCPNNKYEEARKQRLEENKKRFQDLGISTISKNLTEIANSAKKSPHRTPRPKAKTNEVVEPRRSSRVRNLVPSYREDVGIELPPLRKRSRSSPSSWGSYIARPLDEIKEATHEERVRALEAAEALQSNLQSTNPSFVKSMVRSHVYSCFWLGLPSKFCEEHLPKTVHNMILEDENGSEHEAVYLGNRAGLSGGWRGFALEHKLDDGDALVFELVEAARFKIYIVRAFPDSTEDGKQISEEEDNKHATKASKADSNHESESNKTKRKRQAVVDKAHELASSENNVPESSIDNEVKSKELSPRKRAKVSQKKLQKKSKEEAQVETRKPKAATKPKANKAKESEESIVRENGDSSKKNDAGIDPKEFEPVEEGSKVSRRKKAAPKLFRKRA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0919 391 MobiDBLite consensus disorder prediction 27 45 - -
Dod08g0919 391 Gene3D - 113 230 IPR015300 -
Dod08g0919 391 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 5 243 - -
Dod08g0919 391 MobiDBLite consensus disorder prediction 235 277 - -
Dod08g0919 391 Pfam B3 DNA binding domain 139 227 IPR003340 GO:0003677
Dod08g0919 391 MobiDBLite consensus disorder prediction 1 69 - -
Dod08g0919 391 MobiDBLite consensus disorder prediction 53 67 - -
Dod08g0919 391 CDD B3_DNA 137 228 IPR003340 GO:0003677
Dod08g0919 391 SMART B3_2 139 230 IPR003340 GO:0003677
Dod08g0919 391 ProSiteProfiles B3 DNA-binding domain profile. 139 230 IPR003340 GO:0003677
Dod08g0919 391 Coils Coil 8 28 - -
Dod08g0919 391 MobiDBLite consensus disorder prediction 314 379 - -
Dod08g0919 391 MobiDBLite consensus disorder prediction 235 391 - -
Dod08g0919 391 MobiDBLite consensus disorder prediction 8 26 - -
Dod08g0919 391 MobiDBLite consensus disorder prediction 293 307 - -
Dod08g0919 391 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 243 IPR044837 -
Dod08g0919 391 SUPERFAMILY DNA-binding pseudobarrel domain 133 228 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0919 Dod-Chr8 11236129 11247212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0919 10 229 B3 DNA Binding Superfamily AT5G58280 53.012 1.32e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod08g0919 B3 1.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0919 - - gmx:100786265 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0919 08 11236129 11247212 Dod08g0919 08 11236129 11247212 ECH