Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0893 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGTCATGAAGGAGGTGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCTTGTGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGGGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAGTTGATGGGCACATACCGAATTACCCGAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCCCAAATGACGCTGCAGCCATTAACACCGCAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCGAATTATTTCTGCAAGACATTAACGGCAAGTGACACCAGCACACATGGAGGGTTTTCTGTTCCTCGCCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACTGCAACCACCTGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGGCACCTTCTTACAACCGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTAGTGGCAGGGAGATTCTGTGCTTTTCATATGGAATGA 654 0.4755 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGRFCAFHME* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0893 217 CDD B3_DNA 127 217 IPR003340 GO:0003677
Dod08g0893 217 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 210 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod08g0893 217 Pfam B3 DNA binding domain 128 215 IPR003340 GO:0003677
Dod08g0893 217 SMART B3_2 128 217 IPR003340 GO:0003677
Dod08g0893 217 ProSiteProfiles B3 DNA-binding domain profile. 128 217 IPR003340 GO:0003677
Dod08g0893 217 SUPERFAMILY DNA-binding pseudobarrel domain 112 215 IPR015300 -
Dod08g0893 217 Gene3D - 126 217 IPR015300 -
Dod08g0893 217 PANTHER AUXIN RESPONSE FACTOR 8 1 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0893 Dod-Chr8 10908242 10911819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0893 1 214 B3 DNA Binding Superfamily AT1G30330 84.186 4.81e-128 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod08g0893 B3 3.8e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0893 - - gmx:100784804 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0893 08 10908242 10911819 Dod08g0893 08 10908242 10911819 ECH