Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0875 ATGTCACTCATTACACTCTCCACCCTAATCATCATCATTCTGTTCACACTCTCCTCAACAACCACCTCACACTACTCTTCTTCCTCTTCCCAGCCACCTTCTTCTCCCTCTTCTTCGGCATCTTCCTCTCTTTCCGAATGGCGATCCGCGCACGCCACCTACTACGCCGCCGCGGATCCCCGCGACGCTGTGGGCGGCGCGTGCGGTTACGGCGACCTCGTGAAGGCAGGTTATGGCATGGCAACTGTCGGCCTCAGTGAGTCGCTGTTCGAGAGGGGCCAGATCTGCGGCGCGTGCTTCGAGCTGAGGTGCGTTGAGGACCTCCGGTGGTGCATTCCCGGGACTTCGATCATCGTGACGGCGACGAACTTCTGCGCGCCGAATTACGGCTTCGCTAACGACGGCGGAGGGCACTGTAACCCGCCGAACAAACATTTCGTCCTTCCGATTGAGGCGTTTGAGAAGATCGCGATTTGGAAGGCTGGGAACATGCCGGTGCAGTACCGAAGGATACAGTGCAGAAGGGAAGGAGGAATCCGATTTACAGTCACTGGTTCTGGCATCTTCATTTCAGTGCTGATCAGCAATGTTGCTGGTCATGGAGACATAGTTGGGGTGAAGGTTAAGGGCTCGAGAACTGGTTGGCTTCCAATGGGTCGGAATTGGGGGCCAAAACTGGCATGTAAATGCGTTACTACAGAATCAACCTCTTTCTTTTGA 720 0.5514 MSLITLSTLIIIILFTLSSTTTSHYSSSSSQPPSSPSSSASSSLSEWRSAHATYYAAADPRDAVGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFELRCVEDLRWCIPGTSIIVTATNFCAPNYGFANDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIQCRREGGIRFTVTGSGIFISVLISNVAGHGDIVGVKVKGSRTGWLPMGRNWGPKLACKCVTTESTSFF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0875 239 Pfam Lytic transglycolase 83 168 IPR009009 -
Dod08g0875 239 PRINTS Expansin signature 117 127 IPR002963 GO:0009664
Dod08g0875 239 PRINTS Expansin signature 104 115 IPR002963 GO:0009664
Dod08g0875 239 PRINTS Expansin signature 77 91 IPR002963 GO:0009664
Dod08g0875 239 PRINTS Expansin signature 136 153 IPR002963 GO:0009664
Dod08g0875 239 PRINTS Expansin signature 177 189 IPR002963 GO:0009664
Dod08g0875 239 PRINTS Expansin signature 189 210 IPR002963 GO:0009664
Dod08g0875 239 PRINTS Expansin signature 153 166 IPR002963 GO:0009664
Dod08g0875 239 PANTHER EXPANSIN-A15 10 225 IPR002963 GO:0009664
Dod08g0875 239 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 223 IPR007117 -
Dod08g0875 239 SMART dpbb_1 82 168 IPR007112 -
Dod08g0875 239 PANTHER EXPANSIN 10 225 - -
Dod08g0875 239 Gene3D - 178 238 IPR036749 -
Dod08g0875 239 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Dod08g0875 239 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Dod08g0875 239 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Dod08g0875 239 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Dod08g0875 239 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Dod08g0875 239 SUPERFAMILY Barwin-like endoglucanases 43 196 IPR036908 -
Dod08g0875 239 Gene3D - 31 174 IPR036908 -
Dod08g0875 239 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 178 IPR007112 -
Dod08g0875 239 Pfam Expansin C-terminal domain 179 224 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0875 Dod-Chr8 10633927 10636915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0875 46 223 Expansin Gene Family AT3G03220 88.202 4.95e-120 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0875 - - gmx:100809568 360.533