Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0874 ATGGCGATTCAAATTCATGATCAAAGCGGAGTTACTAGATCACAGGGTGGTGCTCATACAGTAGGAAATGGAGCATCTTTTATTTCTGGAGCGCATTCTGTTTCGCGTATTCAGCTAAATGATCAGTTTTCTTGTGGAAATGACTATTCCCCCAAGGTGAGGAAACCATATACTATCTCAAAGCAGAGAGAGAGATGGACTGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTGTTTGGTCGGGCCTGGCGACGGATCGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCCAAGGTTGTTCGAGACTCTGGTGGGAACAGTACACGTTTGGTGGAGCCAATTGAGATTCCACCTCCACGGCCAAAGCGAAAGCCGATGCATCCTTACCCTCGTAAACTAGTAGACATCCCCAATAGGGAAATTTCTAACCCAGAGCAGTCATTGAGGTCTAATTCTCTTAAGTCATCAGATTTTGATCAAGACAACAAATCCCCCAAGTCAGTATTATCTGCAGTCATTTCGGAAACCCTTGGTTCCTCGGATTCGGATACACCAACCGGAAGTTTATCCCCTGTATCATCCATTAGTGGGGTCCATAATAGTAGTTTTGCCATAGCTGAACACAAAACATCGTTTGAGTACTTCAAGTCCCCACCACCAGTTGGACTGAATCCTGGTTCTGCTCATGATGAGCGCCCTCTTGTGAAACTCGAGCATTTTCACAACGAAAGTGTTTCTACCAAAGATGACGCAGCAGAGGAATCATCTGGTCGCACTCTCAAACTTTTCGGCGCAACTCTATTCTTGACAGATACCTGCAGACCATCTTCTCCAATCTTGGAGGTATGCAAACCAATACCTGCTGCCATGCATCTTATGCAACTTCAGAGTAGAAATTCAGATGTTGCAGACGGTCCTGCAACTGTTGTCCCTTGGTGGACTCTTTCTAACAATAGACCATTCATGCCCCTGCACAAGGAGCCTGAGGGAAAGCATCCAGATTCTGATCGCGGCGAGTTTGAAAGCAAAGAAGTTCAAAAGGAAGGATCATGGAGCAGTTCGAACACTAGCTCAGTTAGTGATGGAGAGAACAATATTGAAAAACCAGATGATCAAGCCAAAAGTCATGTGCGTTGCCATCACCTTGGCCGCACTACACCAAGTGAAACATCAACCATATCTGAGCTAAGAATAAGACCTAAAACCTGTGGAAAAGGGTTTGTACCGTACAGAAGGTGCATGTCAGATAGAGAAAACTATCACCACTCATCATTAACAGGTGAGAAGAGGGAAGAGCAACGTATCAGGCTTTCCTTATAG 1356 0.4462 MAIQIHDQSGVTRSQGGAHTVGNGASFISGAHSVSRIQLNDQFSCGNDYSPKVRKPYTISKQRERWTDEEHKKFLEALKLFGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVVRDSGGNSTRLVEPIEIPPPRPKRKPMHPYPRKLVDIPNREISNPEQSLRSNSLKSSDFDQDNKSPKSVLSAVISETLGSSDSDTPTGSLSPVSSISGVHNSSFAIAEHKTSFEYFKSPPPVGLNPGSAHDERPLVKLEHFHNESVSTKDDAAEESSGRTLKLFGATLFLTDTCRPSSPILEVCKPIPAAMHLMQLQSRNSDVADGPATVVPWWTLSNNRPFMPLHKEPEGKHPDSDRGEFESKEVQKEGSWSSSNTSSVSDGENNIEKPDDQAKSHVRCHHLGRTTPSETSTISELRIRPKTCGKGFVPYRRCMSDRENYHHSSLTGEKREEQRIRLSL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0874 451 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Dod08g0874 451 CDD SANT 65 108 IPR001005 -
Dod08g0874 451 PANTHER PROTEIN REVEILLE 7-RELATED 29 437 - -
Dod08g0874 451 MobiDBLite consensus disorder prediction 336 358 - -
Dod08g0874 451 PANTHER SWI/SNF COMPLEX-RELATED 29 437 - -
Dod08g0874 451 MobiDBLite consensus disorder prediction 335 406 - -
Dod08g0874 451 SMART sant 62 110 IPR001005 -
Dod08g0874 451 MobiDBLite consensus disorder prediction 152 179 - -
Dod08g0874 451 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Dod08g0874 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Dod08g0874 451 MobiDBLite consensus disorder prediction 359 375 - -
Dod08g0874 451 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 61 110 IPR006447 GO:0003677
Dod08g0874 451 MobiDBLite consensus disorder prediction 128 146 - -
Dod08g0874 451 ProSiteProfiles SANT domain profile. 61 112 IPR017884 -
Dod08g0874 451 SUPERFAMILY Homeodomain-like 57 110 IPR009057 -
Dod08g0874 451 MobiDBLite consensus disorder prediction 376 390 - -
Dod08g0874 451 MobiDBLite consensus disorder prediction 432 451 - -
Dod08g0874 451 MobiDBLite consensus disorder prediction 115 179 - -
Dod08g0874 451 Gene3D - 65 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0874 Dod-Chr8 10626452 10629887 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod08g0874 Myb_DNA-binding 4.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0874 - - gmx:778060 575.474