Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0861 ATGAGACCAAACATTGATCTTGAATTGGAGGCCTCTGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCATCCAGTGTATCTATTCAAGAAGCCTCTGCAGGTCCTTGCAGTGACAGCCTCACCAACTCTTCCATCATCACAAATCCAACAGTGATTCATCCTAATTCAGATGCTGTTTCACTTGAGTTAACTCTCAACTTCAAGAACAACGAGCTAGGGGCTAGAGATTCAATAGGATTCTCATTCTCAAGCACTAGTGAGAGCAGCAATGAACCTGCCTCTCAGACGACGACAGCAACCGTTCCGCGAGTCTTCCCTTGCAATTACTGCCAGCGCAAGTTTTTCAGCTCTCAGGCTCTTGGTGGACACCAGAATGCTCACAAGAGAGAAAGAACATTGGCAAAAAGGGCTATGAGAATGGGATTTTTCTCTGAGAGGTATGCTAGTAGTCTAGCATCTCTACCTCTGCATGGTTCTTTCAGGTCCTTAGGAATAAAGGCACACTCTTCAGTGCACCATGGTTTCTCACCAACAACTAGGCCTCCTGAGGTGAAAAGCAATGCAAGATTTGAACAAGGGTATGTTGGTCATCCAATATTCTTGGAGGATGATGAGTCAGAACTGATGTGGCCAGGTAGTTTTCGCCAGGTGTCGGATGTAGGTGATAACACTCATCAGAAATTCATACTGAATAATGGAAGGCCAAACTTGAGTTTCACTGAGGTGAATCCACAAGTAGACATAGAGAACTCAACACCAGATTTGACATTGAAACTTTGA 783 0.4444 MRPNIDLELEASAEYESEVSSQVASSVSIQEASAGPCSDSLTNSSIITNPTVIHPNSDAVSLELTLNFKNNELGARDSIGFSFSSTSESSNEPASQTTTATVPRVFPCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASSLASLPLHGSFRSLGIKAHSSVHHGFSPTTRPPEVKSNARFEQGYVGHPIFLEDDESELMWPGSFRQVSDVGDNTHQKFILNNGRPNLSFTEVNPQVDIENSTPDLTLKL* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0861 260 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Dod08g0861 260 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Dod08g0861 260 PANTHER ZINC FINGER PROTEIN JAGGED 1 260 IPR045320 GO:0003700
Dod08g0861 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Dod08g0861 260 Gene3D Classic Zinc Finger 84 151 - -
Dod08g0861 260 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0861 Dod-Chr8 10410339 10413111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0861 88 260 C2H2 Transcription Factor Family AT1G66140 50.739 4.02e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod08g0861 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0861 - - gmx:100794851 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0200 04 2483814 2487713 Dod08g0861 08 10410339 10413111 PCT