Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0853 ATGTCTTTCTCTGTAATGGAAGCTTGCAAGAAGCGAAGGCGCTGGCCAAAGATCTTCATGCTCCATTCCTTCGCTGACCCTGGATGCCCAATTGCTCCTTCGGGTCCCTTCCGCGACAACGTTAGAACGTTCCTCAGAGAATGTGCAGAGCTCGAAGATTACCTTTTGCAGAACAACCCTCTCTGGTGCACCCTTTTGGTCAGCGAGAAGACCAACCTCATGGCACCTCTCTACACCCTCGAAGAGGACGTTTACAACTCGTCGCACCCTTTCTGTGATCATTGCCGCTGCGCAGGTTGGAGTGGCCATTTTGTGTCCAAGAGAAGGTACCATTTCATAATCCCAATGGACAACGGGTGGCATAAACCCTTACCTGAAGGTGCTCTTGATAACCAGAGCCACCTCTTGCATGGGGTGATTCATTGCAATGGGTATGGCCATTTGGTCTCCATTAACGGCATTGAAGGGGGCTCCAAAGTTCTCACTGGGAGGGAGATCATGGATCTCTGGGACAGGATCTGCACAAACCTTAGAGCAAGGAAAATTGCATTGGAAGATGTTTCAAGGAAGAGGCGTATGGATCTTCGCCTACTTCATGGAGTTGCTTATGGCCATTCTTGGTTTGGTAGGTGGGGCTATAAATTTTGTCGTGGAAGCTTTGGGGTTACAGGTCAAAACTACTATGAAGCAATAGAAGCTCTAGGCTCCTTGGAGCTTGATGAGATTGTAAGAGATTTAACCAAGGCAAAGTGCCACAAAGAGGTCAAACAAATAGTTCGCTGCTATAGAGACATGAGTGAGACTCAGATCAGCACAATGAGGGATCTTCTCAGGTTCATGCTCACTGTCAAGTCTCGTGCCCCTTTGTCCAAGATATCAGTGGATTGTGCTGCTCCTTCTTCATCCATCATGTCAAGAAATTCAACCAAACATGCCCTTTCAAATAGATCGAATCCAATGAAGGACAAGTCTGCAAGGTACAAGAAGTTCAGCACTGCAGTGGTCAGCATGGACAGCAGGTGGCCAACAAGGAGGCTGGAGTTTGCAGCCCAGGTGATCGTTGATGCGCTGAAAGAGCACAAGGCAGTGACATCAGGTTCTGCTGGGATGACAAGGCAGGATGTGAGGGATGCTGCTAGGCTCCACATTGGTGACACAGGCTTGCTTGATTATGTGCTGAAATCACTGAACAATGTGATTGTTGAAAACTATGTCATTCGCAGAATGGTTAACCCGTTAACTAGGATCCTTGAGTACACCATTCATGAGCTTGGAAATGGGTTTAAGGCCCCAGAAGTTGTTGTGGAGACCGAGATGATGGCTCCTATGGATCCTCAAGGTGAGTCATCCAGGGTGCCTGGTAATGATGTTTACAGCGATGTGTTTTACCTTTACAAGAATCTGCTGTTGGGGTACCCCAACTCAGAATCAGTGGACTTGCCAGTTCAGATAGTGCTAGATAGCAGGCACTTTGTCAAGGAGTGGGAGTTCATGGATGAAATGGAGCAAGTCTTGACATTCATCTGCAGGCTCAAGCCAAATTTTGTTGACATAAAATCTGAGCTGAGTGGGGAGCCACCTTGTGGTGAGATTGTGATGGTTCCACTGCATGCAACTGTTGGGGACTTGAAGCAAGCTGCTGAGGCTGCAATGAGGGACTCATACTGCATTGCAGAGAGGCTCATGGTGACAGAAATCACTGAATTGTTAGGTGCAAGTGATGAGGAGGTGCTGTTTGGTGTGATCCAGTCAGGTGTGGAGCTTACTGTGAGGGGAATTGCTTTTGATTTGTGCACACCATTGAAGTACCAAGGTGGTTCTGATAACTGGAAGGTGAGGTGTGAGTGTGGTGCACAGGATGATGATGGGGAGAGGATGGTGGCTTGTGACATATGTGAGGTGTGGCAGCACACAAGGTGTTGTGGGATTGATGATTCTGAGACTGTGCCACCACTTTTTGTGTGCTCAGGTTGCTGTGATTCACTTGCACCACCAAGGATTGAGTCATCCTTTGCTGTTGATTGTGCTGATGCTTTTCTGGTTTCACCAGAGCCAACACAGTTGCTGGAGTATGGATATGGTTACTGA 2088 0.4789 MSFSVMEACKKRRRWPKIFMLHSFADPGCPIAPSGPFRDNVRTFLRECAELEDYLLQNNPLWCTLLVSEKTNLMAPLYTLEEDVYNSSHPFCDHCRCAGWSGHFVSKRRYHFIIPMDNGWHKPLPEGALDNQSHLLHGVIHCNGYGHLVSINGIEGGSKVLTGREIMDLWDRICTNLRARKIALEDVSRKRRMDLRLLHGVAYGHSWFGRWGYKFCRGSFGVTGQNYYEAIEALGSLELDEIVRDLTKAKCHKEVKQIVRCYRDMSETQISTMRDLLRFMLTVKSRAPLSKISVDCAAPSSSIMSRNSTKHALSNRSNPMKDKSARYKKFSTAVVSMDSRWPTRRLEFAAQVIVDALKEHKAVTSGSAGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVENYVIRRMVNPLTRILEYTIHELGNGFKAPEVVVETEMMAPMDPQGESSRVPGNDVYSDVFYLYKNLLLGYPNSESVDLPVQIVLDSRHFVKEWEFMDEMEQVLTFICRLKPNFVDIKSELSGEPPCGEIVMVPLHATVGDLKQAAEAAMRDSYCIAERLMVTEITELLGASDEEVLFGVIQSGVELTVRGIAFDLCTPLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLAPPRIESSFAVDCADAFLVSPEPTQLLEYGYGY* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0853 695 CDD PHD_MMD1_like 614 658 - -
Dod08g0853 695 SMART PHD_3 613 659 IPR001965 -
Dod08g0853 695 ProSitePatterns Zinc finger PHD-type signature. 614 658 IPR019786 -
Dod08g0853 695 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 666 - -
Dod08g0853 695 SUPERFAMILY FYVE/PHD zinc finger 606 664 IPR011011 -
Dod08g0853 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 663 IPR013083 -
Dod08g0853 695 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0853 Dod-Chr8 10310073 10313113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0853 10 664 PHD Transcription Factor Family AT5G22260 32.249 2.97e-117 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0853 - - mtr:MTR_5g077750 1096.65