Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0838 ATGGGAAGGCAACCTTGTTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGACAAGAAGCTCATCAGTTTCCTCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTTGCAGGGCTGTTAAGGTGTGGGAAGAGTTGCAGGCTCAGGTGGACAAACTACCTGAGGCCAGACTTAAAGAGAGGCCTTCTTTCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAACAGGTGGTCCAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATAAAAAACCACTGGAATACACACATAAAGAAAAAGCTCAAGAAAATGGGCATTGACCCTGTCACACACAAACCACTCTCAAATACAAATGAGCAGAACCTAAACCAACCTAAACAACAACTACACCAACCAGTAGAAGAAGAACGTGAGAATCAACCACCATTGCAAGTTGACTTTGACCCAAAATTTGAACATGAAACTCACCAAGATAATAAGGAGCCAGAGAAGCCAGAGACTTCATATGGGTCATCAACCATAACTGAATCTAAAGAGGAAGACAAAATCATCATGACACCATTATTTGACACAATGGAGATAATGAACAATGGTTTCTGCACAGATGATGTGCCAATAATAGAAGCAGATGAGATTCTTGTGCCTTGCGCTTCTTCTTCTTCTTCTTCCTCAACATCTACATCATCATCATCTTCTTCTTCTTCATCAAATTCAGAAAATCTCTTCCTTGAAGACCTGCAGCTCCCAGATTTTGAGTGGTCTTGTTACTACATTAATAATGATGATAGTGTTATTAACAACAATAACAAAAACATCGATGGTGACAACAATAACACCATTGTGGCCTTGTGGGATGATGATGACTTCATTAGCAGTTTGAATTTGCTTATCAATGATGATGATGAGGGTGACAATAATAGCAAGCAAGTCTTTGATGCTCCTCTATGTCAGTACCAAAGAATGATCATGGATTCAGAATCTTGGGCATATGGGTTGCTTTGA 1047 0.4097 MGRQPCCDKVGLKKGPWTAEEDKKLISFLLTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSNTNEQNLNQPKQQLHQPVEEERENQPPLQVDFDPKFEHETHQDNKEPEKPETSYGSSTITESKEEDKIIMTPLFDTMEIMNNGFCTDDVPIIEADEILVPCASSSSSSSTSTSSSSSSSSSNSENLFLEDLQLPDFEWSCYYINNDDSVINNNNKNIDGDNNNTIVALWDDDDFISSLNLLINDDDEGDNNSKQVFDAPLCQYQRMIMDSESWAYGLL* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0838 348 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod08g0838 348 CDD SANT 16 61 IPR001005 -
Dod08g0838 348 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod08g0838 348 SMART sant 13 63 IPR001005 -
Dod08g0838 348 SMART sant 66 114 IPR001005 -
Dod08g0838 348 MobiDBLite consensus disorder prediction 126 144 - -
Dod08g0838 348 Gene3D - 70 153 - -
Dod08g0838 348 MobiDBLite consensus disorder prediction 232 254 - -
Dod08g0838 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod08g0838 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod08g0838 348 Gene3D - 11 67 - -
Dod08g0838 348 PANTHER MYB TRANSCRIPTION FACTOR 1 311 - -
Dod08g0838 348 MobiDBLite consensus disorder prediction 145 180 - -
Dod08g0838 348 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod08g0838 348 CDD SANT 74 112 IPR001005 -
Dod08g0838 348 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod08g0838 348 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Dod08g0838 348 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 311 - -
Dod08g0838 348 MobiDBLite consensus disorder prediction 120 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0838 Dod-Chr8 10037908 10040407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0838 1 315 MYB Transcription Factor Family AT1G66230 55.763 1.89e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod08g0838 Myb_DNA-binding 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0838 K09422 - gmx:100792103 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0838 08 10037908 10040407 Dod08g0838 08 10037908 10040407 ECH
Dod08g0838 08 10037908 10040407 Dod04g0219 04 2730049 2732142 PCT