Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0825 ATGCTTCGAAACCCCAATAATCTTGCTCCTTCTTCTTCCTCTTCTTCTTGTTATAGAAGCCTTCTGCCACCCAAATACTCACACTCACGCACCCTCTTTCTCACGATCTCTTTTTCCCGTTCTGATTATATAGGTTTTTGGCCTTTTGCGTTTTCGTCCCTTAATTCTGCTATATTCTCCAGGGTTAAATTATTATTCTTCATTAAATTTGCTAGTGCAATGGCTTCTTCCTTGGATATGTCGCTTGATGATAGGATAAAGAACAGGAGTAACAGAGAAAGAGGTAGAGGACGTGGCAGAGCCCGCCATGGCCGTGGGCTGGGCAGGAATCTTGGTGGTGGAAGATCGACTGGTGCTGTTCGAAGAGGTCCTCTTACGGTTAATACCCGGCCATCGTCTTATGCCATTGCCAAGTCTAGTCGCAGGACCAGGCCTTTTCCATGGCAGCATGATTTGTTTGAAGACAGCCTAAGAGCTGCTGGGATACAAGGAGTAGAAGTTGGTACAAAGTTGTATGTTTCAAATTTGGACCACGGAGTAACTAACGAAGATATAAGGGAGCTTTTTTCTGAGATTGGAGATTTGAAGCGCTTTGCAGTTCATTATGACAAAAATGGACGTCCAACTGGTTCAGCTGAAGTTGTCTATACCAGAAGAAGTGATGCATTTGCTGCTCTTAAGCGATACAATAATGTGCTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCCAATGCAGAATCGCCTGTAAATGCTCGTGTAAATGTCTCAGGGGTAAATGGGCAGAGGAAGAGGACTGTTGTAATGACGCCTGGTGGAGGTCGTACTGGAGGTCCTGCTGGGCTCAATCGTGCTGCTGTTGGAGCACAACGTGGTGGTGGAAGGATGAGGGGTGGGATTGGGCGTGGTCAAGGCCGAGGCCGCGGCCGCGGTCGCAGTCCGTGGTCGTGGTCGCGGCCTTGGACGTGGTCGGGGCGGAGGTCAAGGTCGTGGAACAAAGGACAAGTCAGCTGA 1020 0.4843 MLRNPNNLAPSSSSSSCYRSLLPPKYSHSRTLFLTISFSRSDYIGFWPFAFSSLNSAIFSRVKLLFFIKFASAMASSLDMSLDDRIKNRSNRERGRGRGRARHGRGLGRNLGGGRSTGAVRRGPLTVNTRPSSYAIAKSSRRTRPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSEIGDLKRFAVHYDKNGRPTGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAESPVNARVNVSGVNGQRKRTVVMTPGGGRTGGPAGLNRAAVGAQRGGGRMRGGIGRGQGRGRGRGRSPWSWSRPWTWSGRRSRSWNKGQVS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0825 339 MobiDBLite consensus disorder prediction 89 124 - -
Dod08g0825 339 SUPERFAMILY RNA-binding domain, RBD 95 243 IPR035979 GO:0003676
Dod08g0825 339 SMART rrm1_1 170 242 IPR000504 GO:0003723
Dod08g0825 339 MobiDBLite consensus disorder prediction 291 339 - -
Dod08g0825 339 Gene3D - 164 245 IPR012677 -
Dod08g0825 339 MobiDBLite consensus disorder prediction 319 339 - -
Dod08g0825 339 CDD RRM_THOC4 169 243 - -
Dod08g0825 339 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 74 301 - -
Dod08g0825 339 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Dod08g0825 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 246 IPR000504 GO:0003723
Dod08g0825 339 PANTHER THO COMPLEX SUBUNIT 4C 74 301 - -
Dod08g0825 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 239 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0825 Dod-Chr8 9806699 9812881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0825 168 243 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 2.15e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0825 K12881 - gmx:100820344 302.753