Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0813 ATGGAGGGTCCTAGTCCTAGGGAAGGGCATGGGACTGAAGAGGAAGGGGGAGCAACGCCGGTGGCCGTACGGAGGGCCCTGGAGATGCTGGAGGCGGCGGACCCTCTCGTGAGGGTGCAGGCTGCCCGCGACATCCGCCGCCTTACGAAGAACTCCCACCGGTGCCGTCGCCAGCTCCGCCACGCCGTACGGCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTCCCACGAACCCGCCCTTCTCGCCTTGCTCAACCTTGCCGTCAAAGACGAACAGAACAAAATCAGCATTGTGGAAGCCGGTGCACTAGAACCTATAGTCAGTTTCCTCAACTCACAAAGTCTAAATCTGCAAGAGTACGCAACTGCATCATTGCTCACTCTATCTGCCTCCACAACCAACAGACCAATGATTAGTGCTTGTGGTGCCATTCCTCTTCTAGTGGAGATTCTAAGAGATGGAAGACCACAAGCCAAAGCTGATGCACTCACAGCTCTCTCCAATTTATCAACACACCCTGATGACCTCACCGACATTCTCGAAACCGATCCCATCCCTTCAATAGTTAGCCTTCTCAAGACTTGCAAGAAATCCTCAAAAACTGCAGAGAAGTGCTGTGCTTTGATAGAATCCTTGGTGGGTTATGATAAGGGCAGAATTGCCCTCACGTCAGAAGAAGGTGGGGTTCTAGCAGTTGTAGAAGTTCTTGAGAATGGAACATTTCAGAGTAGGGAACATGCTGTTGGAGCACTATTGACACTGTGCCAAAGTGATAGGTGTAAGTATAGGGAACCGATCCTTAGAGAAGGTGTTATTCCAGGGCTTCTTGAGCTAACAGTTCAAGGGACACCAAAGTCTCAACCAAAAGCACATACCCTTTTGCAATTACTGAGAGAGTCTCCTTATCCAAGGTCAGACGTTGAGCCTGACACACTAGAGAACATAGTTTGCAACATCATATCACAGATTGATGGGGAAGATCAAGCTGGAAAAGCAAAGGAGATGCTGGCTGAGATGGTTCAAGTTAGCATGGAACGGAGTTTGAGACACTTGCAGCAAAGGGCTCTTGTATGCACCCCAAGTGATTTGTCTATTGCTAGTTGTGCCTCTCAAGTTTCTTTAAAATGA 1134 0.5 MEGPSPREGHGTEEEGGATPVAVRRALEMLEAADPLVRVQAARDIRRLTKNSHRCRRQLRHAVRPLVSMLRVDSPESHEPALLALLNLAVKDEQNKISIVEAGALEPIVSFLNSQSLNLQEYATASLLTLSASTTNRPMISACGAIPLLVEILRDGRPQAKADALTALSNLSTHPDDLTDILETDPIPSIVSLLKTCKKSSKTAEKCCALIESLVGYDKGRIALTSEEGGVLAVVEVLENGTFQSREHAVGALLTLCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKAHTLLQLLRESPYPRSDVEPDTLENIVCNIISQIDGEDQAGKAKEMLAEMVQVSMERSLRHLQQRALVCTPSDLSIASCASQVSLK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0813 377 Gene3D - 19 357 IPR011989 -
Dod08g0813 377 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 177 IPR000225 GO:0005515
Dod08g0813 377 SUPERFAMILY ARM repeat 25 316 IPR016024 -
Dod08g0813 377 PANTHER U BOX DOMAIN-CONTAINING 11 360 - -
Dod08g0813 377 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Dod08g0813 377 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
Dod08g0813 377 Pfam Armadillo/beta-catenin-like repeat 136 172 IPR000225 GO:0005515
Dod08g0813 377 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 11 360 - -
Dod08g0813 377 SMART arm_5 218 258 IPR000225 GO:0005515
Dod08g0813 377 SMART arm_5 51 90 IPR000225 GO:0005515
Dod08g0813 377 SMART arm_5 92 132 IPR000225 GO:0005515
Dod08g0813 377 SMART arm_5 133 173 IPR000225 GO:0005515
Dod08g0813 377 SMART arm_5 174 216 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0813 Dod-Chr8 9660933 9664977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0813 23 300 U-box Gene Family AT2G23140 32.857 8.68e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0813 - - gmx:100780954 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0813 08 9660933 9664977 Dod08g0813 08 9660933 9664977 ECH
Dod04g0240 04 2970691 2971326 Dod08g0813 08 9660933 9664977 PCT