Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0803 ATGCGGAGGAACAGCCCAGGATACTACAGTCCTCCGAGGAGAGGGTACGGTGGCAGAGGGAGGTCACCTCCGCCGCCGCCTCCTCCTCCGTCGAGGAGGGGATACGGTGGTGGTGGTGGCGGCGGGAGGCGCAGGGAGAACAGCAATGGAAGCCTTCTTGTTCGGAACATCCCCCTTGATTGCAGACCCGAGGAGCTTCGGGTCCCCTTCGAGCGCTTCGGACCCGTCCGTGATGTTTACATCCCAAAGGACTATTATTCAGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGATGCCTCAGAGGCACAGTACCATATGAACAGACGGATTTTTGCTGGGAGGGAAATAACTGTTGTTGTAGCGGCTGAAACAAGAAAAAGACCAGAGGAGATGCGCCAAAGGTCTAGTAGGGTCAGAGGACCGGTGAGCTATGGGGCCCGAAGATCTCATTATGGGCGGTCTCGATCTCGCTCAGCTAGCAGATCACACTCTCCACCATATCACTCTGGTTCTCGAAGTAGATATCGCTCAAGGTCTAGGTCCTATTCTCCTGCCCCAAGGCGGCAAAGTGATTACTCTGTGTCCCCTAGACGGCAGCCAGAGCACCCTAGATCACCAAGAGGTCCTCCTGTGGAGCGAGATGGTGATCAAAAGCGCAGGTCATATTCTCCTGCTTATGGCAATGGGACTGATCAGAATGAAAGCAATGGATATGCCGAGAAATCTATGTACAAGGCTGAGGCTGATCGTGGCCAGTGGAAGTCATCTGGACACAGAGCATCGAGATCACCCCCTGGATCTAGATCTAGGTCGGCTGAATTGTCTCCCGGACATTGA 852 0.5411 MRRNSPGYYSPPRRGYGGRGRSPPPPPPPPSRRGYGGGGGGGRRRENSNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRRIFAGREITVVVAAETRKRPEEMRQRSSRVRGPVSYGARRSHYGRSRSRSASRSHSPPYHSGSRSRYRSRSRSYSPAPRRQSDYSVSPRRQPEHPRSPRGPPVERDGDQKRRSYSPAYGNGTDQNESNGYAEKSMYKAEADRGQWKSSGHRASRSPPGSRSRSAELSPGH* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0803 283 MobiDBLite consensus disorder prediction 18 33 - -
Dod08g0803 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Dod08g0803 283 MobiDBLite consensus disorder prediction 163 198 - -
Dod08g0803 283 PANTHER OS02G0252100 PROTEIN 25 281 - -
Dod08g0803 283 MobiDBLite consensus disorder prediction 130 283 - -
Dod08g0803 283 Gene3D - 43 186 IPR012677 -
Dod08g0803 283 MobiDBLite consensus disorder prediction 199 225 - -
Dod08g0803 283 MobiDBLite consensus disorder prediction 1 51 - -
Dod08g0803 283 SMART rrm1_1 51 124 IPR000504 GO:0003723
Dod08g0803 283 MobiDBLite consensus disorder prediction 228 244 - -
Dod08g0803 283 SUPERFAMILY RNA-binding domain, RBD 47 157 IPR035979 GO:0003676
Dod08g0803 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Dod08g0803 283 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 25 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0803 Dod-Chr8 9562436 9566615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0803 28 112 Eukaryotic Initiation Factors Gene Family AT3G11400 38.372 7.88e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0803 K12900 - gmx:100804294 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0803 08 9562436 9566615 Dod08g0803 08 9562436 9566615 ECH