Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0786 ATGAGTTTTGTTTTTCGAGGAACCCGGCCAGATATAGAAAATGGATTTCCAGGATTTATGCCTGAGAGGCGTGCATTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAATTCACTCACATTCCTTGTTACGGTTCTCCTATTATTCATGATACTGAACTCCCACCAGATGTCACCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTAATGGCCACAATGTTGAGGATGTATGCAACATGCCAGCAGCTTCAAGCTCAGGCCCAAGCTCATGCAGCAGCAGCTAGTGGGCTTCTTGGCCACACTGAACTGCGGTTGCATATGCCACCATCAATAGCTCTTGCAAGCCGAGGCCGTCTGCAGGGCCTCAGACTTCAACTTGCACTCCTTGATCGGGAGTTTGACGATCTAGATTATGAAACATTAAGAGCTCTTGATTCAGATAATGTTCCTACTGCACCTTCTATGACCGATGAAGAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCACAAAACAATGGTTCCTCAATGCAACAGGCTTCTTCCTCCACTCCTGCCGAGAAGAAGCAAGATAATTCAAATGCAGCAGGGAGCATGAAAGCTTCAGATGATGAGCTGACTTGCAGTGTATGTTTGGAACAAGTTAATGTTGGAGATATACTCCGTAGCTTGCCCTGCTTGCATCAGTTTCATGCTAATTGCATCGATCCCTGGCTGCGGCAACAAGGAACATGCCCTGTCTGTAAATTCAGAGCAGGATCTGGGTGGAATGAAAGTGGACACCATAATGATATAGCGGACATGGTTTGA 825 0.4606 MSFVFRGTRPDIENGFPGFMPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTAPSMTDEEINALPVHKYKVSGPQNNGSSMQQASSSTPAEKKQDNSNAAGSMKASDDELTCSVCLEQVNVGDILRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNESGHHNDIADMV* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0786 274 CDD RING-H2_PA-TM-RING 212 254 - -
Dod08g0786 274 SUPERFAMILY RING/U-box 208 257 - -
Dod08g0786 274 SMART ring_2 213 253 IPR001841 -
Dod08g0786 274 Pfam Ring finger domain 212 254 IPR001841 -
Dod08g0786 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 258 IPR013083 -
Dod08g0786 274 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Dod08g0786 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 268 - -
Dod08g0786 274 MobiDBLite consensus disorder prediction 170 204 - -
Dod08g0786 274 MobiDBLite consensus disorder prediction 173 204 - -
Dod08g0786 274 PANTHER TARGET OF ERK KINASE MPK-1 1 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0786 Dod-Chr8 9353990 9358805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0786 1 274 C3H Transcription Factor Family AT3G55530 77.899 3.49e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0786 K16283 - gmx:100777936 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0786 08 9353990 9358805 Dod08g0786 08 9353990 9358805 ECH