Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0784 ATGTCTTCACAATATTGGTGTTATAGGTGCAATCGATCCGTGAGGGTATGGAGGCAGGACATAACGATTTGTCCCGAATGCGACAGCGGATTCGTTGAAGAAATTGACCCTCATTCACGCACCGTCTACGTCGACAACCGCCGCCGACGGTTCCCTGCGGCGGCCATGTACATGATCGGCAACCACCATCACCACCATTACCACCATCCTAACCTCAATGACGACGACGACAATAACAGCTACAACTCAATGCACCAGGGTAACCGGCGGCAACAACAACAACATTGCCCGACAGCAAACAGCACCTCCTCTGGCGACGGTGGTGACCGGTCACCGTTCAATCCCGTAATCATGCTCCGCGGCGGTGCAGAAGGGTCATCGGACGGAACCAGCCGCCGCCGCAGTGGGTTTGACCTCTTCTACGACGACGGCGCCGGCACCGGACTCCGCCCCTTACATCCGAGCATGTCTGAGTTTCTTCTCGGAACAGGCTTTGACAGGGTGTTGGAACAGCTTTCGCAAATCGAAAGACAAGACAATCATAACAACCATCATCATCAGCACCACCCTCCTCCGGCATCAAAATCCACCGTGGAATCATTGCCGACGGTGGAGATCAAAGATAATCACTTGGCCACGGAGCCACACTGTGCAGTTTGCAAGGAACCCTTTGAACTCGGAACAACAGCAAGAGAAATGCCATGCAAACACATATACCATTCTGAATGCATATTACCTTGGCTTGCACTTCGAAACTCTTGCCCCGTTTGTCGCCACGAGTTGCCACCCGATGAGGATCACGTGCAGAACGCACGTGCCTCAAGGGAGGAGAATGTTGGGTTGACGATATGGCGGTTACCCGGTGGAGGTTTTGCAGTTGGGAGATTCTCTGGTGGGAGAACAGGGTCTGAGACGGAACTTCCTGCTGTGTACACTGAAATGGATGGTGGTCAGTTTGGTAATGGTGGTGGTGGTAACAATGTTGGCGAGACAAGCAGGATTTCTTGGATGGTGGAATCTTCTAGAGAGAGGGAAAGTGTTGGTGGTGGGGTAAGGAGATTGGTTAATAATCTTTTTGGTTGCTTTAGAGGCGTTGGTGGTGGTGGTGGTGGGGTTTTTCGGAATCGTGGATCTAGTGGTTCTTCTACTAGTGGGGAGTTTACTAGACCCTTGAGGGGTGGTAGTGTTGTTTCGGATCCTTCCTCTGCACGTTCCCGCAGGACTTGGTCTATGGATGTACAAAATGGGACGAGGCCGTGGTGA 1263 0.5234 MSSQYWCYRCNRSVRVWRQDITICPECDSGFVEEIDPHSRTVYVDNRRRRFPAAAMYMIGNHHHHHYHHPNLNDDDDNNSYNSMHQGNRRQQQQHCPTANSTSSGDGGDRSPFNPVIMLRGGAEGSSDGTSRRRSGFDLFYDDGAGTGLRPLHPSMSEFLLGTGFDRVLEQLSQIERQDNHNNHHHQHHPPPASKSTVESLPTVEIKDNHLATEPHCAVCKEPFELGTTAREMPCKHIYHSECILPWLALRNSCPVCRHELPPDEDHVQNARASREENVGLTIWRLPGGGFAVGRFSGGRTGSETELPAVYTEMDGGQFGNGGGGNNVGETSRISWMVESSRERESVGGGVRRLVNNLFGCFRGVGGGGGGVFRNRGSSGSSTSGEFTRPLRGGSVVSDPSSARSRRTWSMDVQNGTRPW* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0784 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 3 359 - -
Dod08g0784 420 MobiDBLite consensus disorder prediction 375 389 - -
Dod08g0784 420 MobiDBLite consensus disorder prediction 76 109 - -
Dod08g0784 420 Pfam Protein of unknown function (DUF1117) 279 382 IPR010543 -
Dod08g0784 420 SMART ring_2 217 257 IPR001841 -
Dod08g0784 420 Pfam zinc-ribbon 4 35 IPR039525 GO:0061630
Dod08g0784 420 MobiDBLite consensus disorder prediction 398 420 - -
Dod08g0784 420 CDD RING-H2_RNF126_like 217 258 - -
Dod08g0784 420 Pfam Ring finger domain 216 258 IPR001841 -
Dod08g0784 420 MobiDBLite consensus disorder prediction 65 132 - -
Dod08g0784 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 264 IPR013083 -
Dod08g0784 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 359 - -
Dod08g0784 420 MobiDBLite consensus disorder prediction 373 420 - -
Dod08g0784 420 SUPERFAMILY RING/U-box 197 265 - -
Dod08g0784 420 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0784 Dod-Chr8 9326894 9328156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0784 151 272 C3H Transcription Factor Family AT5G01980 39.344 5.23e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0784 - K11982 gmx:100807324 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0784 08 9326894 9328156 Dod08g0784 08 9326894 9328156 ECH