Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0757 ATGGCTCCTCCTTCTGATATTAATCACCTTTCTCATCCATGTATATATGGGGATTATACTTCTTCTCGCTCAGAGAGAAGGTCTGGTTTCATGGGATGGTTAAGTAAGCTTTTCAAAGGAGGGTCCAACAGAGGAAGGGGTGGTCGTCGTCTACAAGAGCCTGACGAGGAAAACATGGTTTGGCGAGCTCCATCTAGAGCTTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGAATCTAGGCCATTCAATGGCACTTTCTTCAGCAGAAGATTTAAAGAGACCAAATGGATATAATTGGGGGACAGACACTGATGATTACCCAAAGGCACTTCAGGATAGCCTGAACTCATCAGCATACCCTCCATATTCTGCTGCACCATTCTACCCCACAAGGGATTCTAGCAAAATATGTGGTGGCTGCAATCAGGAGATACTCTATGGAAATTGTTTGAGCTGCATGGGTACTTATTTTCATCCAGACTGCTTTCGCTGCTACTCTTGTCATTACCCCATTACTGAGCGCGAGTTTTCTTTGTCAGGGAAGAATCCATATCACAAGTCCTGTTTCAAAGAATTGACACACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAACACAGCTCGCTGCTGCAGTTGTGAAAGATTGGAGCCTCGGAATATAAAATACTATAGACTGGAAGATGGACGTAGTTTGTGCATGGAGTGCATGGAATCAGCTATAATAGATACTGGTGATTGTCAGCCTCTCTACCATTCTATCAGAGATTATTATGAAGGAATGAATATGAGAATTGATCAACAAATTCCCATGCTCCTTGTGGCCAGAGAAGCACTTAATGAAGCAATTGTGGGGGAGAAAAATGCTTTCCATCACATGCCAGAAACAAGGGGCATATGCCTTTCAGAAGAGCAGACTATCACCAGTATACATAGAAGGCCAAGAAATGGAAGCCATCGACGAATAGGGATGAGAACTCAAAATCAAATGCTGGTTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTCTATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTTGCCCATGAGTTGATGCATGCCTGGTTACGTCTTAAAGGTTACCGCAACCTAAATCCTGAAGTAGAGGAAGGCATCTGTCAGGTTCTTTCATATATGTGGCTTGAGTCAGAAGTAATGCCATCACCATCTGCAGCATCATCTTCTTATTCTTCTTCCTCCTCCTACACCTCCTCCTCGAAGAAGGGGGCAAAATCTCAAGTTGAAAACAAATTGGGAGATTTTTTCAAGAACCAGATTGCCAATGATTCTTCACCTGCTTATGGTGGTGGATTTAGAGCTGCTAATGAAGCTGTTAACAAATATGGCTTACGTGCTATCCTCGACCATATTCATTTCACTGGTCTTCTTCCTGAGTAA 1506 0.427 MAPPSDINHLSHPCIYGDYTSSRSERRSGFMGWLSKLFKGGSNRGRGGRRLQEPDEENMVWRAPSRALDDRARAQKEKENLGHSMALSSAEDLKRPNGYNWGTDTDDYPKALQDSLNSSAYPPYSAAPFYPTRDSSKICGGCNQEILYGNCLSCMGTYFHPDCFRCYSCHYPITEREFSLSGKNPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPRNIKYYRLEDGRSLCMECMESAIIDTGDCQPLYHSIRDYYEGMNMRIDQQIPMLLVAREALNEAIVGEKNAFHHMPETRGICLSEEQTITSIHRRPRNGSHRRIGMRTQNQMLVRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSPSAASSSYSSSSSYTSSSKKGAKSQVENKLGDFFKNQIANDSSPAYGGGFRAANEAVNKYGLRAILDHIHFTGLLPE* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0757 501 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 500 - -
Dod08g0757 501 CDD LIM_DA1 139 191 - -
Dod08g0757 501 PANTHER PROTEIN DA1-RELATED 2 20 500 IPR045218 -
Dod08g0757 501 MobiDBLite consensus disorder prediction 425 445 - -
Dod08g0757 501 ProSiteProfiles LIM domain profile. 137 197 IPR001781 -
Dod08g0757 501 Pfam Protein DA1 288 495 IPR022087 -
Dod08g0757 501 Pfam LIM domain 139 192 IPR001781 -
Dod08g0757 501 SMART lim_4 138 190 IPR001781 -
Dod08g0757 501 ProSitePatterns LIM zinc-binding domain signature. 139 173 IPR001781 -
Dod08g0757 501 Gene3D Cysteine Rich Protein 131 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0757 Dod-Chr8 9063014 9068274 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod08g0757 DA1-like 6.8e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0757 - - aip:107608934 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0757 08 9063014 9068274 Dod08g0757 08 9063014 9068274 ECH
Dod04g0299 04 3709889 3714801 Dod08g0757 08 9063014 9068274 PCT