Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0724 ATGGAATTGGAAACCTTGTATGCTCCTTGTTTCATGTCAAACTCAAATTGGTTTGTCCAAGAGAGCCACTCCAGCGCAGAATGGACTGTAGAAGAGAATAAGAAGTTTGAGAGTGCACTTGCCATATATGATAAGGACACCCCAGACAGATGGCTGAAGGTGGCTGCAATGATCCCTGGGAAGACTGTGTATGATGTGATCCAGCAATACAGGGAATTGGAAGAAGATGTCACCAAAATCGAAGCTGGCGAGGTTCCGGTTCCCGGGTATGTTTCCTCTTCTTTCACCTTTGAGCTGGTTCACAACCAGAACTATGATGGATGCAGAAGGAGGCCTGCCACTGTCAGGGGTTCTGACCAGGAAAGGAAGAAAGGGGTCCCCTGGACTGAAGAGGAACACAGGCGTTTTCTGATGGGGCTCCTGAAGTATGGCAAAGGTGATTGGAGAAACATCTCTCGCAATTTTGTAGTCACAAAGACTCCCACACAAGTAGCTAGCCATGCTCAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGGAAAGATAAGAGAAGGCCTAGCATCCATGATATAACAACTGTTAACCTAGCAGAAACTGCCACATTGGATAAGAACAAGCCCATTTTGTTCAATGAGTCTCATCACATGCTTGTACCTCAGCAGAAGCTGACTAGCATGCCAAAAGTAGAATTGGATTGGATCAGTCACTACAATGATGGATCAGTCATGGTTTTCAACCCAAATTGTGATGATTTGTTGATGCCAGCTTCACCTGATATGGCTTCCAAGGCCCTCAAACAGCAAGGGCAGGATCTCTATGACTGTGCTTTCCATGAGGCTTATGCAAAGTTTAGAATCCCGGGTTTTAGGACAGCTTCTAGGGACTTCAATAATGAAGCTGTTTTTGGTATTCATGCGGTGTAA 924 0.4535 MELETLYAPCFMSNSNWFVQESHSSAEWTVEENKKFESALAIYDKDTPDRWLKVAAMIPGKTVYDVIQQYRELEEDVTKIEAGEVPVPGYVSSSFTFELVHNQNYDGCRRRPATVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLAETATLDKNKPILFNESHHMLVPQQKLTSMPKVELDWISHYNDGSVMVFNPNCDDLLMPASPDMASKALKQQGQDLYDCAFHEAYAKFRIPGFRTASRDFNNEAVFGIHAV* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0724 307 SMART sant 24 76 IPR001005 -
Dod08g0724 307 SMART sant 124 174 IPR001005 -
Dod08g0724 307 ProSiteProfiles SANT domain profile. 23 78 IPR017884 -
Dod08g0724 307 ProSiteProfiles Myb-like domain profile. 20 74 IPR001005 -
Dod08g0724 307 ProSiteProfiles SANT domain profile. 128 176 IPR017884 -
Dod08g0724 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 286 IPR043363 -
Dod08g0724 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 123 175 IPR006447 GO:0003677
Dod08g0724 307 Gene3D - 126 177 - -
Dod08g0724 307 CDD SANT 27 73 IPR001005 -
Dod08g0724 307 Pfam Myb-like DNA-binding domain 127 171 IPR001005 -
Dod08g0724 307 Pfam Myb-like DNA-binding domain 27 72 IPR001005 -
Dod08g0724 307 Gene3D - 19 87 - -
Dod08g0724 307 ProSiteProfiles Myb-like domain profile. 120 172 IPR001005 -
Dod08g0724 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 286 - -
Dod08g0724 307 SUPERFAMILY Homeodomain-like 27 81 IPR009057 -
Dod08g0724 307 CDD SANT 127 171 IPR001005 -
Dod08g0724 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 176 IPR017930 -
Dod08g0724 307 SUPERFAMILY Homeodomain-like 122 176 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0724 Dod-Chr8 8699820 8702135 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod08g0724 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0724 - - gmx:778039 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1487 07 40676384 40678908 Dod08g0724 08 8699820 8702135 ECH
Dod08g1080 08 13751003 13753805 Dod08g0724 08 8699820 8702135 ECH
Dod05g0569 05 8242646 8245542 Dod08g0724 08 8699820 8702135 ECH
Dod08g0724 08 8699820 8702135 Dod08g0724 08 8699820 8702135 ECH