Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0687 ATGTGCAGTGGTTCAAAAAGTAGACTTTCTTCCTCAAACCAAGTCATGGACACTGAGTTTCAGAAGCAGAGCCAGGATGGTCTCCATAACTTCTCAGTTTTGCTTGAGTTGTCTGCATCTGATGATTTTGAAGCTTTCAAAAGAGAGGTGGAAGAGAAGAGTATGGATGTGAACGAGGCAGGCTTTTGGTATGGCAGAAGAATTGGATCAAAGAAGATGGGATCCGAGCTGAGGACCCCTCTCATGATTGCTTCCTTGTTTGGAAGCACAAGGGTGCTGAAGTATATTATCAAGACAGGCAAGGTTGATGTGAACAAGGCATGTGGTTCTGATAGGGCCACTGCTCTCCATTGTGCTGTCACCGGGGGCACTGAATCCTCGCCTGAGATTGTCAAGCTCTTGCTTGATGCTCAGGCTGACGCTGACTGCATCGATGCTAGTGGAAATAAGCCTGTTAATCTGATTGCTCCTGCCTTTAACTCTTCCTCAAGTTCACGGAGGAAGGCCATGGAGTTGTTTCTCAGGGGTGGGGAAGGAGATCAGTTTTTCCTCCAGGAGATGGAGCAGCAGATGTTCATGGAGAAGAAAGAAAAAGAAGGAACTGATAAGAAGGAATATCCTGTTGATATATCGTTGCCTGACATAAATAATGGTGTCTATGGATCAGACGAGTTTAGGATGTACAGCTTCAAGGTGAAGCCATGCTCAAGGGCTTACTCCCACGATTGGACCGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCACGCAAATACCCTTACAGCTGTGTTCCCTGCCCAGAGTTCCGCAAAGGGACCTGCCAGAAGTTGGATTCCTGTGAATATGCACATGGTGTTTTTGAGTCCTGGCTGCATCCTGCCCAGTACCGAACAAGGCTTTGCAAGGATGAGACTGGCTGCACTAGAAAAGTCTGCTTCTTTGCTCACAAACCTGAAGAGTTGCGCCCCGTGTATGTCTCCACTGGGTCAGCTATGCCTTCACCAAAATCATATTCAGCTAGTGCACTCGACATGACAGTGATGAGTCCACTGTCTCTTAGTTCCACATCATTGCCCATGCCAACTGTTTCGACACCGCCAATGTCTCCCTTGGCAGCTTCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTTACTCCACCATCATTGCAGCTTCCAGGTAGCCGGCTGAAGACCGCCTTGAGTGCCAGGGATCTGGATTTGGAGATGGAATTGCTTGGTCTAGACAGTCCAGCTCGTCAACAGCAGCAGCAGCAGCAGCATCAGCAACTGATTGAAGAGATTGCCAGGATCTCTTCCCCATCTTTCAGGAACAAGGAATTCAGTAGGATTGGTGATTTGAATCCTACTAACCTTGATGACCTGTTAGCAGCTGCTGATCCTTCTCTCTTATCTCAGTTTCACGGGCTGTCTGTGCAGCCTTCAACTCCTACACAGTTGCAATCTTCAAATGCGCTTCAGATGCGCCAAAACATGAACCACCTTCGGGCGAGTTATCCATCCAACGTCTCGTCCTCTCCAGTGAGGAAACCCTCAGCTTTCGGGTTTGACTCCTCCGCAGCTGTGGCAGCAGCAGTGATGAATTCCAGGTCTAATGCCTTTGCGAAGCGAAGCCAAAGCTTCATTGATCGTGGGGCAGTGAATCACCATCTCGGGCTGTCTTCACCATCCAACCCCACCTGCAGGGTGTCATCTGGCCTCTCAGATTGGAGTTCCCCAACTGGGAAAGTGGATTGGGGTGTGAATGGAGATGAACTGAACAAGCTGAGGAGATCGGCTTCTTTTGGGTTCAGAAACAATGGGTCAGCAACTGCCACCCCATTGGCACATTCAGAACATGTTGAGCCAGACGTGTCATGGGTTCATTCATTGGTTCCTTCTGAAAGTTCTGAGATATTTGGTGCTGAGAAGAAGCAGTATGATCTCAGCAAAGAGATGCTTTCACCATGGGTGGAGCAGATGTACATAGAGCAGGAGCAGATGGTAGCATAA 2037 0.4865 MCSGSKSRLSSSNQVMDTEFQKQSQDGLHNFSVLLELSASDDFEAFKREVEEKSMDVNEAGFWYGRRIGSKKMGSELRTPLMIASLFGSTRVLKYIIKTGKVDVNKACGSDRATALHCAVTGGTESSPEIVKLLLDAQADADCIDASGNKPVNLIAPAFNSSSSSRRKAMELFLRGGEGDQFFLQEMEQQMFMEKKEKEGTDKKEYPVDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKLDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYVSTGSAMPSPKSYSASALDMTVMSPLSLSSTSLPMPTVSTPPMSPLAASSSPKSGSLWQNKINLTPPSLQLPGSRLKTALSARDLDLEMELLGLDSPARQQQQQQQHQQLIEEIARISSPSFRNKEFSRIGDLNPTNLDDLLAAADPSLLSQFHGLSVQPSTPTQLQSSNALQMRQNMNHLRASYPSNVSSSPVRKPSAFGFDSSAAVAAAVMNSRSNAFAKRSQSFIDRGAVNHHLGLSSPSNPTCRVSSGLSDWSSPTGKVDWGVNGDELNKLRRSASFGFRNNGSATATPLAHSEHVEPDVSWVHSLVPSESSEIFGAEKKQYDLSKEMLSPWVEQMYIEQEQMVA* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0687 678 Pfam Ankyrin repeats (3 copies) 78 142 IPR002110 GO:0005515
Dod08g0687 678 Gene3D - 265 327 - -
Dod08g0687 678 Gene3D - 31 173 IPR036770 -
Dod08g0687 678 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Dod08g0687 678 SUPERFAMILY Ankyrin repeat 29 154 IPR036770 -
Dod08g0687 678 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Dod08g0687 678 SMART c3hfinal6 299 322 IPR000571 GO:0046872
Dod08g0687 678 SMART c3hfinal6 264 290 IPR000571 GO:0046872
Dod08g0687 678 PANTHER UNKEMPT FAMILY MEMBER 19 677 IPR045234 -
Dod08g0687 678 SMART ANK_2a 111 143 IPR002110 GO:0005515
Dod08g0687 678 SMART ANK_2a 76 106 IPR002110 GO:0005515
Dod08g0687 678 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 19 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0687 Dod-Chr8 8043327 8046637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0687 29 673 C2H2 Transcription Factor Family AT5G12850 38.042 7.07e-140 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod08g0687 Ank_2 3.9e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0687 - - gmx:100783376 1002.66