Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0679 ATGGAAAACTACTGCTATTCTGGCTGGCCTCTAGACACTAACAACTTGGCTCAATGCAACTCTGCACCAAATAGTAACCAATCCCCTTTTTCAATCCCAACTCAGATACTGCCTCATGCATGTGACTCCTCAGCCTTTGCCTCTCTTCAATTTGGCCAGTTCCCTTCATGGCCTATAGCCATTGAAGGGCTTGCAGAAGATAGAGCTGCAAGTGCTTCCAAGAGCCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGGATCAATGCACAGCTTGCAACTCTAAGGAAATTGATTCCCAAGTCTGATAAGATGGACAAGGCAGCATTACTAGGGAGTGTGGTAGACCATGTCAAAGATCTAAAGAGTAAAGCCATGGATGTGAGCAAAACCATTACAGTTCCAACTGAAATTGATGAAGTAACAATTGACTATCACCCTGCTCAAGATGAAAGCTATGCTAAAGTGAACATATCAAAGGACAACATAGTCATTTCAGTTTGCTGTGATGATCGACCAGAACTATTCTCTGAACTCATCCAAGTCCTCAAAGGGATGAGGCTCAAAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGAATCAAGAGCATATTGGTGCTGTGCTCCAAAGACAGTGAAGAGGGTAGTGTTTGCCTTAGCACTCTCAAACAGTCACTTAAATCAGCTGTGAACAAAATTGCTTCATCATCCATGTCATCATCAAATTGTCCCACCAGGAGTAAAAGGCAAAGGTTCTTCTTGCCTTCTCATTGCGTACAATGA 783 0.4393 MENYCYSGWPLDTNNLAQCNSAPNSNQSPFSIPTQILPHACDSSAFASLQFGQFPSWPIAIEGLAEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKSKAMDVSKTITVPTEIDEVTIDYHPAQDESYAKVNISKDNIVISVCCDDRPELFSELIQVLKGMRLKAVKADIASVGGRIKSILVLCSKDSEEGSVCLSTLKQSLKSAVNKIASSSMSSSNCPTRSKRQRFFLPSHCVQ* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0679 260 CDD ACT_UUR-ACR-like 163 200 - -
Dod08g0679 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 123 IPR036638 GO:0046983
Dod08g0679 260 Pfam Helix-loop-helix DNA-binding domain 74 120 IPR011598 GO:0046983
Dod08g0679 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 120 IPR011598 GO:0046983
Dod08g0679 260 SMART finulus 77 126 IPR011598 GO:0046983
Dod08g0679 260 CDD bHLH_AtAIG1_like 66 143 - -
Dod08g0679 260 Gene3D - 65 129 IPR036638 GO:0046983
Dod08g0679 260 PANTHER TRANSCRIPTION FACTOR BHLH30 27 258 IPR045847 GO:0003700|GO:0006355
Dod08g0679 260 PANTHER TRANSCRIPTION FACTOR BHLH51 27 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0679 Dod-Chr8 7920533 7922399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0679 28 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.265 6.96e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod08g0679 HLH 8.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0679 - - gmx:100306102 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0679 08 7920533 7922399 Dod08g0679 08 7920533 7922399 ECH
Dod04g0369 04 4889685 4891345 Dod08g0679 08 7920533 7922399 PCT