Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0677 ATGATCGGGACGAAATCCAACGGCGGAGATCGAATCAAGGGGTCGTGGAGCCCGGAGGAGGACGCGACGCTGCTGAAGCTGGTGGTGCAGCATGGTCCGAGGAACTGGTCGGCGATAAGCAGCGGGATACCTGGGAGGTCAGGGAAGTCGTGCCGACTGCGGTGGTGCAACCAGCTCAGCCCCGACGTGCAGCACCGCCCGTTCACTCCGGCGGAGGACAGCATCATCCTGAGGGCGCACGCAGTCCACGGTAACAAGTGGGCTACCATATCACGCCTCCTCCCGGGGCGCACCGACAACGCAATCAAGAACCACTGGAACTCCACCCTCCGCCGTCGCCGCAACACCATCGCCGCCGCAGCAGGTGGCGGCCTCTCCGCCGCCACATCGTCCTCGTCCGATTTCAGCCCCATGCTTGCCTGCAAGAAGCGCCACCCCGGCGACGCCGATCTGTTGGAGTCATCCGGAAACTTCAAGCGGCCGTGCTTGGAGGCAGTTACGGTTACGGTTACGGGGTACAATGACGGTTACGGAAACGGTTACGGAGACGGTTATGGAAACGGTTACGTGGATCAGGTGGAGGAGAAGGAAGGAGTGGCGGTTACGACGTTGAGCCTGTTGCCGCCAGGGGAGAAGGTGGTGGAGGAAGTGGTGGAGAGGAAGGAAGAGGAGCAACGCGGTGGTGGCGGTGGTGAATGGGAAGGGAACATCGAAAGTGGGGAAGAAAAGCGAGCGTGTTTGATGAAGGTGGTAAGGCGCATGATAGAGGATGAGGTTAGAAGTTACTTTGAGAGAGTCAAAATTGCACCATTGGATCTTGATCATCACCTACTTCACAAGTGA 843 0.5931 MIGTKSNGGDRIKGSWSPEEDATLLKLVVQHGPRNWSAISSGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDSIILRAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRNTIAAAAGGGLSAATSSSSDFSPMLACKKRHPGDADLLESSGNFKRPCLEAVTVTVTGYNDGYGNGYGDGYGNGYVDQVEEKEGVAVTTLSLLPPGEKVVEEVVERKEEEQRGGGGGEWEGNIESGEEKRACLMKVVRRMIEDEVRSYFERVKIAPLDLDHHLLHK* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0677 280 SMART sant 64 112 IPR001005 -
Dod08g0677 280 SMART sant 12 61 IPR001005 -
Dod08g0677 280 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Dod08g0677 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Dod08g0677 280 CDD SANT 15 57 IPR001005 -
Dod08g0677 280 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Dod08g0677 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 114 IPR017930 -
Dod08g0677 280 SUPERFAMILY Homeodomain-like 11 106 IPR009057 -
Dod08g0677 280 CDD SANT 67 110 IPR001005 -
Dod08g0677 280 Gene3D - 67 113 - -
Dod08g0677 280 PANTHER MYB PROTEIN-RELATED 7 217 - -
Dod08g0677 280 Gene3D - 12 64 - -
Dod08g0677 280 PANTHER TRANSCRIPTION FACTOR MYB73 7 217 - -
Dod08g0677 280 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Dod08g0677 280 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0677 Dod-Chr8 7906951 7908376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0677 9 113 MYB Transcription Factor Family AT5G67300 74.286 1.02e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod08g0677 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0677 - - ahf:112702359 252.292