Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0676 ATGTCGACGAACCACGACTCTCACAAATTCGACTGGCACTTCGACACGGAGCTCGAAGACGAAACAATCGAGCTCCGAGGCAAGAAACTCTTCTTCGTCATCGCCCTCTTCGCCATTGTCCTCTTCACCACCGCGCTCTTCTTCTACGCGCGCTGGATCTGCCGCTCCCGCGGCCTCATACCAACAACCACGACATTCGCCTCATCGATCCACTTGCGCCACGTGCCTCCGCATCAGCAATCGGAGGGACTCGACGCCGCCGCGATCAAGAAGCTGCCGATTGTGCTGCACCAAGGAGCGCCGTCATCTCCGGCGGATCCGAACGGCGGAGGTGGAGGAGCGGCGTTGGCGGATTGCTGCATCTGCCTGAGCGCGTTCAGAGACGGAGAGAAACTGAAGGTTCTTCCGGTTTGCGAGCATTGGTTCCACTGCGAGTGCGTTGACAAGTGGCTCAGGAATCACTCGAGTTGCCCGCTATGTAGAGCTTCGCTGAAGCTCGATCCTAATTCCTTTCCGAAGCTTTTGATCCAAGAACCTCCACTTCGGATTAATGACCGATTCTGA 564 0.5691 MSTNHDSHKFDWHFDTELEDETIELRGKKLFFVIALFAIVLFTTALFFYARWICRSRGLIPTTTTFASSIHLRHVPPHQQSEGLDAAAIKKLPIVLHQGAPSSPADPNGGGGGAALADCCICLSAFRDGEKLKVLPVCEHWFHCECVDKWLRNHSSCPLCRASLKLDPNSFPKLLIQEPPLRINDRF* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0676 187 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Dod08g0676 187 SUPERFAMILY RING/U-box 118 170 - -
Dod08g0676 187 Pfam Ring finger domain 118 161 IPR001841 -
Dod08g0676 187 SMART ring_2 119 160 IPR001841 -
Dod08g0676 187 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 170 IPR044675 -
Dod08g0676 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 166 IPR013083 -
Dod08g0676 187 PANTHER RING-H2 FINGER PROTEIN ATL66 3 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0676 Dod-Chr8 7895176 7895739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0676 12 170 C3H Transcription Factor Family AT3G11110 38.037 9.40e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0676 - - adu:107496923 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0371 04 4898735 4899274 Dod08g0676 08 7895176 7895739 PCT