Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0675 ATGGAACAAGACCACCACCACCCTAACCCTAACACCACCACTCATCATCACCCACCCCAAGAAACCAGACCCACCGCCACCGCCGTTGGAACCACCACTCTCTTGCAAACACCTAACAGTAACAACACCAGTGCCAGCAACAGCAGTAAAAGCACCGTTGCAAAAACCAATAATAATACTAGTACTAATAACAATAACAATAGCCGCAAGTGCAAGGGTAAAGGTGGACCAGACAACAACAAGTTTCGTTACCGTGGTGTGAGGCAAAGGAGCTGGGGGAAATGGGTGGCTGAGATCAGGGAGCCACGGAAGAGGACCCGGAAGTGGCTCGGAACCTTCTCAACCGCCGAGGAGGCCGCCAGGGCCTACGACCGCGCCGCCATCATCCTCTATGGTTCGAGGGCACAGCTCAATCTGCAACCCTCCGGTTCGAGCAATAACTCTTCTAATTCCACTCGTGGATCTTCTTCTTCTTCTTCGACTCAGACTCTTCGGCCTTTGCTTCCTCGCCCTGCCGGGTTCACCTTCTCAGCCGGTTCCCGGTTTCCCATGGTGTTTAACAACGGCAACACCTCCCCGGGGTTCGTGCCGTTCGGGGTTTACAGTATGAATAACGGTAATGTTGTTACACCACCGGTTTTGTGCCCCATGGATAGTAGTAGTAATAATAATAACACAGTGGTGCAGTATCAGCAACAACAACATCATCAAGTGGTGCAAGTGCAACTTCAGCAACAGCAACAGTGTAATCAGAACACTGAACCTGATCAGCAACAGAATTGCATGGTGGAGGAAGTGGTGAATAATAATTCCTTGGTGGGTTCAGTGGTGGGGCCAAGCTTGCTTTGTTCTTCTCAGGTTGCTATGGATCATGCAGCGGTGGATCCGGATCCGACGTCGTTGGAGGTGGTGGGGGCTGGGGAACTCGGATCTATGTGGTCATCGTTGATGAATAATGATCAGGAAGAGTACCCGGTTAGCCTGTGGGATTATAACTACAATGATCCTTTCTTCTTTGAATTTTAG 1026 0.5049 MEQDHHHPNPNTTTHHHPPQETRPTATAVGTTTLLQTPNSNNTSASNSSKSTVAKTNNNTSTNNNNNSRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEEAARAYDRAAIILYGSRAQLNLQPSGSSNNSSNSTRGSSSSSSTQTLRPLLPRPAGFTFSAGSRFPMVFNNGNTSPGFVPFGVYSMNNGNVVTPPVLCPMDSSSNNNNTVVQYQQQQHHQVVQVQLQQQQQCNQNTEPDQQQNCMVEEVVNNNSLVGSVVGPSLLCSSQVAMDHAAVDPDPTSLEVVGAGELGSMWSSLMNNDQEEYPVSLWDYNYNDPFFFEF* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0675 341 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 339 - -
Dod08g0675 341 MobiDBLite consensus disorder prediction 138 170 - -
Dod08g0675 341 Pfam AP2 domain 83 131 IPR001471 GO:0003700|GO:0006355
Dod08g0675 341 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Dod08g0675 341 CDD AP2 83 140 IPR001471 GO:0003700|GO:0006355
Dod08g0675 341 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 15 339 - -
Dod08g0675 341 MobiDBLite consensus disorder prediction 138 166 - -
Dod08g0675 341 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Dod08g0675 341 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Dod08g0675 341 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Dod08g0675 341 SUPERFAMILY DNA-binding domain 83 140 IPR016177 GO:0003677
Dod08g0675 341 MobiDBLite consensus disorder prediction 1 86 - -
Dod08g0675 341 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Dod08g0675 341 MobiDBLite consensus disorder prediction 13 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0675 Dod-Chr8 7874333 7876530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0675 69 341 AP2-EREBP Transcription Factor Family AT2G40220 43.182 1.60e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod08g0675 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0675 K09286 - tcc:18585824 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0675 08 7874333 7876530 Dod08g0675 08 7874333 7876530 ECH