Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0671 ATGGATGATGCTCTATCCAAGATGACAATCTCCCCAGGCTTGTTACCAACTGGGGCTTTGCTAGATTCATTGGTTCACATATCCAATGAAGTTGTCTCAATAGAGAAGTTGCCCTTTTTACACATGAGGAATGTTTCATCCATGATAAGGAGGATCAAGCTTCTCTCTTCTTTGTTTGAAGAGATTCAGGACACAGAAACCCCACTCCCTCCTTCCTCAATCCTTTGTTTCACTGAGCTCTTCTCAGTGATTACAAGGGTGAAGGTTTTGATCCAAGAGTGCAAGGATGGAAGCCCCCTTTGGGGTCTTATACGGTTAGAGTTCATTTCCAAACAATTCTTTGTGCTTGTAAAGGAGATGGGAAGGGCCCTTGATATCTTGCCTCTGAAATTGCTTAACATAACAGCAGATATTAGGGAGCAAGTGGAGCTTCTTCACAGACAAGCAAAGAGGGCTGAGTTAGTCATTGATCCTAGAGAGCTTCAAAGAAGAGAACAGCTCCTACAAGTAATGGCCATCAACAGGCCACAAAACAAGAAGAACAAGGGATTTATGGATTTTGGGAAAGTGGAAGAGATATTAAGCAGCATTGGCTTGAGAACCCCATCAGATTATGATGGAGAAATATCCAAGTTAGAGGCTGAAGCTGAGAATCAAGCAGGCACAGGAGGACTAGTTGTTGTCTCCAGTATAAACAACCTCATATCTCTTGTTTCCTATTCCAAATCCATGGTATTCAGAGATGGAGAAAATGAAAGAGACGAAGGCGACTGTAAGCAACTATCTTCTTCATACTTATACAATAAAATCCATGACAGTTCTTCCTCCTCTCAATCCATAATTACACCTAATGTTCCTGATGAATTTCGTTGCCCGATTTCGCTAGACTTAATGAGGGACCCCGTGATTGTTTCATCTGGGCACACTTATGATCGAAATTCAATTGCACAATGGATAAACTCTGGTCATCACTCCTGCCCCAAAAGTGGGCAAAGGCTAATTCACACTGCTCTAATACCAAACTATGCACTAAAGAGTCTTGTTCAGCAATGGTGCTGTGACAACAATGTCCCAGTGAATGAGCCTAATTCTGAGAGAAGCGACCGCAAGAGGAACTCAAAAGAGAATGCTGTTGATCATATCTCAGCAAACAAAGCAGCTTCTGATGCTGTCAAAATGACAGCAGAATTTCTAGTTGGAAAACTGGCAACAGGTTCAGCTGACACACAAAGACAAGCTGCATATGAACTCAGGTTGCTTGCGAAAACCGGCATGGACAACAGAAGGGTCATAGCTGAGGTAGGTGCTATTCCCTTTCTGGTAACACTGCTAGGATCACATGACCCAAGAATCCAGGAACACGCAGTGACAGCCTTGTTCAACCTCTCAATCTATGACAACAACAAGATATTGATCATGTCAGCAGGAGCAGTTGACAACATAGTTCAAGTTCTTGAACTAGGGAGGACCATGGAGGCAAGAGAGAATGCTGCAGCAGCGATATTCTGCTTGTCTATGGTTGATGAATTCAAGGTGCAAATCGGGGCACGTCCAAGGGCAATACCTGCATTAGTAGGACTCTTGAAAGAAGGCACCCCTATTGGAAAAAGGGATGCTGCAACTGCACTTTTCAACCTTGCTGTGTACAACCCCAACAAGGCAAGTGTTGTTAATGCTGGTGCTGTTGATGTGCTTGTTGAGTTGCTGATGGATGACAAGGCTGGCGTAACAGATGATGCATTGGCTGTGCTTGCTTTGCTACTTGGTTGCTCCCAAGGCTTCCAAGAGATAAGGAATAGTAGAGCTTTGGTGCCTCTTCTTATTGATCTCCTTAGATTTGGGTCAGTGAAAGGGAAGGAAAACTCTATAACACTTTTGTTAGGATTGTGCAAAGAAGAGACTGAGATGGTTGCTAGGCGCCTCTTGGCAAATCCAAGGAGTGTGCCTTCTCTTCAAAGCTTGGCTGCTCATGGTTCCTTGAGAGCTAGGAGGAAGGCTGATGCACTTCTGAGGTTGCTCAATAGGTGCTGCTCTCAGCCTCATCATTCTGTTTGA 2055 0.4404 MDDALSKMTISPGLLPTGALLDSLVHISNEVVSIEKLPFLHMRNVSSMIRRIKLLSSLFEEIQDTETPLPPSSILCFTELFSVITRVKVLIQECKDGSPLWGLIRLEFISKQFFVLVKEMGRALDILPLKLLNITADIREQVELLHRQAKRAELVIDPRELQRREQLLQVMAINRPQNKKNKGFMDFGKVEEILSSIGLRTPSDYDGEISKLEAEAENQAGTGGLVVVSSINNLISLVSYSKSMVFRDGENERDEGDCKQLSSSYLYNKIHDSSSSSQSIITPNVPDEFRCPISLDLMRDPVIVSSGHTYDRNSIAQWINSGHHSCPKSGQRLIHTALIPNYALKSLVQQWCCDNNVPVNEPNSERSDRKRNSKENAVDHISANKAASDAVKMTAEFLVGKLATGSADTQRQAAYELRLLAKTGMDNRRVIAEVGAIPFLVTLLGSHDPRIQEHAVTALFNLSIYDNNKILIMSAGAVDNIVQVLELGRTMEARENAAAAIFCLSMVDEFKVQIGARPRAIPALVGLLKEGTPIGKRDAATALFNLAVYNPNKASVVNAGAVDVLVELLMDDKAGVTDDALAVLALLLGCSQGFQEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEETEMVARRLLANPRSVPSLQSLAAHGSLRARRKADALLRLLNRCCSQPHHSV* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0671 684 MobiDBLite consensus disorder prediction 358 377 - -
Dod08g0671 684 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 17 682 - -
Dod08g0671 684 Gene3D - 513 673 IPR011989 -
Dod08g0671 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Dod08g0671 684 MobiDBLite consensus disorder prediction 363 377 - -
Dod08g0671 684 SUPERFAMILY ARM repeat 396 673 IPR016024 -
Dod08g0671 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Dod08g0671 684 Pfam U-box domain 285 355 IPR003613 GO:0004842|GO:0016567
Dod08g0671 684 PANTHER U BOX DOMAIN-CONTAINING 17 682 - -
Dod08g0671 684 SMART Ubox_2 288 351 IPR003613 GO:0004842|GO:0016567
Dod08g0671 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 359 IPR013083 -
Dod08g0671 684 SMART arm_5 465 506 IPR000225 GO:0005515
Dod08g0671 684 SMART arm_5 590 631 IPR000225 GO:0005515
Dod08g0671 684 SMART arm_5 549 589 IPR000225 GO:0005515
Dod08g0671 684 SMART arm_5 424 464 IPR000225 GO:0005515
Dod08g0671 684 SMART arm_5 508 548 IPR000225 GO:0005515
Dod08g0671 684 ProSiteProfiles U-box domain profile. 284 358 IPR003613 GO:0004842|GO:0016567
Dod08g0671 684 CDD RING-Ubox_PUB 289 331 IPR045210 -
Dod08g0671 684 Pfam Armadillo/beta-catenin-like repeat 550 585 IPR000225 GO:0005515
Dod08g0671 684 Pfam Armadillo/beta-catenin-like repeat 426 463 IPR000225 GO:0005515
Dod08g0671 684 SUPERFAMILY RING/U-box 272 359 - -
Dod08g0671 684 Gene3D - 362 512 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0671 Dod-Chr8 7824132 7826186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0671 23 679 U-box Gene Family AT3G46510 38.855 5.09e-128 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0671 - - gmx:100793498 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0671 08 7824132 7826186 Dod08g0671 08 7824132 7826186 ECH