Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0652 ATGAATTTTCCTGGAATGCCGAAGCCTACTGAGGATGTCAAGCATGTTATAGATTGCCTAGAGAAGATACAAAAGTGGCATTCGCACCCAAGTGTTCTAATCATGGGATATACCTCATTTTTAACATTGATGCGAGAGAATTCGAAGTATGCACACAGAAAGTATATGGCAAAAGTATTGAGGGAAAGTCCAGGTCTCCTGGTACTGGATGAAGGGCACAATCCGAGAAGCACTAAGTCAAGGTTGAGAAAGGTCTTGATGAAAGTACAGACAGAATTGAGAATATTACTGTCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTTAACACACTCTGCTTGGCAAGACCAAAGTTTTCTCATGAGGTGCTGAAAGTATTAGACCCAAAATACCGGAGGAAAAAGAAAGGGGCGGAGAAGTCACTGGAGGCGCGGGCTAGGAAATTCTTCTTAGAAAACATTGCTAAGAAAATTGACTCGAATAATGGTGAGAATAATGGTGAGGAGAGGCTGCAAGGTCTGAACATGTTGAGAAATGTAACAAATGGTTTTATAGATGTTTATGAAGGCGGGAGTTCTGATGGTCTGCCTGGTTTGCAAATCTACACTTTGCTGATGAATACAACTGATGTGCAGCATGAGATTTTGAACAGACTGCACAAGAAAATGGCCAAGTGCAATGGATACCCTCTGGAGTTGGAGCTTTTGATAACTCTTGGATCAATACATCCTTGGTTGGTCAAAACTGCCGTATGCGCTGAAAAGTTCTTCACTATGGCTGAACTGAGTGAGCTAGACAAATGCAAGTTTGATTTGAAAATAGGGTCAAAAGTAAGGTTTGTTTTGAGCCTTATCTATCGCGTTGTCCAGAAGGAGAAGGTTCTCATCTTTTGCCACAACATTGCACCAGTGAAACTGTTTTTAGAATATTTTGAGAAGTACTTTAAATGGCAAAGAGGTAGAGAAGTTTTGGTATTAACTGGGGAACTAGAGCTCTTTGAAAGGGGAAGAGTAATGGATAAGTTCGAGGAGCCTGGTGGAGTATCAAAGATACTACTTGCTTCGATTACAGCTTGTGCTGAAGGAATTAGTTTGACAGCAGCCTCTAGGGTGATCATGTTGGACTCAGAGTGGAATCCATCAAAAACAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGCAGAAAGTGGTTTATGTGTACCAGCTCTTGGTAACCGGTTCATTGGAGGAAGATAAGTACCGAAGAACCACGTGGAAAGAGTGGGTGTCGAGCATGATTTTCAGCGAGGAATTCGTTGAGGACCCTTCCCAATGGCAAGCTGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGCGGAAGACAGGTCTAAGTCATTCCATATGATCATGAAGAATGAAAAGGCTTCAACAAACAGATGA 1431 0.4179 MNFPGMPKPTEDVKHVIDCLEKIQKWHSHPSVLIMGYTSFLTLMRENSKYAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFSHEVLKVLDPKYRRKKKGAEKSLEARARKFFLENIAKKIDSNNGENNGEERLQGLNMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNTTDVQHEILNRLHKKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFTMAELSELDKCKFDLKIGSKVRFVLSLIYRVVQKEKVLIFCHNIAPVKLFLEYFEKYFKWQRGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASTNR* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0652 476 Pfam SNF2-related domain 30 136 IPR000330 GO:0005524|GO:0140658
Dod08g0652 476 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 3 474 - -
Dod08g0652 476 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 442 IPR001650 -
Dod08g0652 476 CDD SF2_C_SNF 270 406 - -
Dod08g0652 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 121 IPR027417 -
Dod08g0652 476 Gene3D - 198 476 IPR027417 -
Dod08g0652 476 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 119 IPR014001 -
Dod08g0652 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 457 IPR027417 -
Dod08g0652 476 Gene3D - 7 160 IPR038718 -
Dod08g0652 476 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 474 IPR044567 GO:0080188
Dod08g0652 476 Pfam Helicase conserved C-terminal domain 278 394 IPR001650 -
Dod08g0652 476 SMART helicmild6 310 395 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0652 Dod-Chr8 7676760 7678190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0652 274 413 RAD5 or RAD16-like Gene Family AT5G43530 34.266 4.24e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod08g0652 Helicase_C 2.6e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0652 K10875 - gmx:100811703 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0652 08 7676760 7678190 Dod08g0652 08 7676760 7678190 ECH
Dod04g0397 04 5203256 5208754 Dod08g0652 08 7676760 7678190 PCT