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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Dod08g0652
ATGAATTTTCCTGGAATGCCGAAGCCTACTGAGGATGTCAAGCATGTTATAGATTGCCTAGAGAAGATACAAAAGTGGCATTCGCACCCAAGTGTTCTAATCATGGGATATACCTCATTTTTAACATTGATGCGAGAGAATTCGAAGTATGCACACAGAAAGTATATGGCAAAAGTATTGAGGGAAAGTCCAGGTCTCCTGGTACTGGATGAAGGGCACAATCCGAGAAGCACTAAGTCAAGGTTGAGAAAGGTCTTGATGAAAGTACAGACAGAATTGAGAATATTACTGTCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTTAACACACTCTGCTTGGCAAGACCAAAGTTTTCTCATGAGGTGCTGAAAGTATTAGACCCAAAATACCGGAGGAAAAAGAAAGGGGCGGAGAAGTCACTGGAGGCGCGGGCTAGGAAATTCTTCTTAGAAAACATTGCTAAGAAAATTGACTCGAATAATGGTGAGAATAATGGTGAGGAGAGGCTGCAAGGTCTGAACATGTTGAGAAATGTAACAAATGGTTTTATAGATGTTTATGAAGGCGGGAGTTCTGATGGTCTGCCTGGTTTGCAAATCTACACTTTGCTGATGAATACAACTGATGTGCAGCATGAGATTTTGAACAGACTGCACAAGAAAATGGCCAAGTGCAATGGATACCCTCTGGAGTTGGAGCTTTTGATAACTCTTGGATCAATACATCCTTGGTTGGTCAAAACTGCCGTATGCGCTGAAAAGTTCTTCACTATGGCTGAACTGAGTGAGCTAGACAAATGCAAGTTTGATTTGAAAATAGGGTCAAAAGTAAGGTTTGTTTTGAGCCTTATCTATCGCGTTGTCCAGAAGGAGAAGGTTCTCATCTTTTGCCACAACATTGCACCAGTGAAACTGTTTTTAGAATATTTTGAGAAGTACTTTAAATGGCAAAGAGGTAGAGAAGTTTTGGTATTAACTGGGGAACTAGAGCTCTTTGAAAGGGGAAGAGTAATGGATAAGTTCGAGGAGCCTGGTGGAGTATCAAAGATACTACTTGCTTCGATTACAGCTTGTGCTGAAGGAATTAGTTTGACAGCAGCCTCTAGGGTGATCATGTTGGACTCAGAGTGGAATCCATCAAAAACAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGCAGAAAGTGGTTTATGTGTACCAGCTCTTGGTAACCGGTTCATTGGAGGAAGATAAGTACCGAAGAACCACGTGGAAAGAGTGGGTGTCGAGCATGATTTTCAGCGAGGAATTCGTTGAGGACCCTTCCCAATGGCAAGCTGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGCGGAAGACAGGTCTAAGTCATTCCATATGATCATGAAGAATGAAAAGGCTTCAACAAACAGATGA
1431
0.4179
MNFPGMPKPTEDVKHVIDCLEKIQKWHSHPSVLIMGYTSFLTLMRENSKYAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFSHEVLKVLDPKYRRKKKGAEKSLEARARKFFLENIAKKIDSNNGENNGEERLQGLNMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNTTDVQHEILNRLHKKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFTMAELSELDKCKFDLKIGSKVRFVLSLIYRVVQKEKVLIFCHNIAPVKLFLEYFEKYFKWQRGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASTNR*
477
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Dod08g0652
476
Pfam
SNF2-related domain
30
136
IPR000330
GO:0005524|GO:0140658
Dod08g0652
476
PANTHER
SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2
3
474
-
-
Dod08g0652
476
ProSiteProfiles
Superfamilies 1 and 2 helicase C-terminal domain profile.
282
442
IPR001650
-
Dod08g0652
476
CDD
SF2_C_SNF
270
406
-
-
Dod08g0652
476
SUPERFAMILY
P-loop containing nucleoside triphosphate hydrolases
26
121
IPR027417
-
Dod08g0652
476
Gene3D
-
198
476
IPR027417
-
Dod08g0652
476
ProSiteProfiles
Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
1
119
IPR014001
-
Dod08g0652
476
SUPERFAMILY
P-loop containing nucleoside triphosphate hydrolases
195
457
IPR027417
-
Dod08g0652
476
Gene3D
-
7
160
IPR038718
-
Dod08g0652
476
PANTHER
SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED
3
474
IPR044567
GO:0080188
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Dod08g0652
Dod-Chr8
7676760
7678190
Transposed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Dod08g0652
274
413
RAD5 or RAD16-like Gene Family
AT5G43530
34.266
4.24e-12
67.0
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
SNF2
Dod08g0652
Helicase_C
2.6e-16
CL0023
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Dod08g0652
K10875
-
gmx:100811703
850.892
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Dod08g0652
08
7676760
7678190
Dod08g0652
08
7676760
7678190
ECH
Dod04g0397
04
5203256
5208754
Dod08g0652
08
7676760
7678190
PCT
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