Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0650 ATGGGTGCTTATGATCAAGGTTCTAATATCAGTCTTGTACCCTTGGATTCTTCTAGAAAGAGGAAAAGTAGGAGTAGAAGGGATGGGTCTAGATCTGTTGCTGAGACTCTTGCAAAGTGGAAGGAATACAATGAGCATCTTGAGTCTGGGAAAGAGGATGCTAAGCCAACTCGTAAAGCACCAGCCAAGGGATCAAAGAAAGGGTGCATGAGAGGGAAAGGAGGACCCCAAAACTCACAGTGTAAATACAGGGGTGTTAGGCAGAGGACTTGGGGAAAATGGGTTGGTGAGATTAGGGAGCCAAATAGAGGGAGTAGACTTTGGTTGGGAACTTTCTCCACTGCACAAGAAGCTGCTCTTGCATATGATGAAGCTGCTAGGGCCATGTATGGCCCTTGTGCAAGGCTCAACTTCCCCGAGATCTCGGATTATGAGTCCATCAAGGAATCGTTGAAGGACTCCTCCATGGCTGCTACTTCTTGTTCCCCTAGTTCTTCGGTGGCTACTCCTGCGGCTTCGGACACAACTGCTATATCGGAGGTTTGTGCAGCTGAGGATGTTAAGGTGAAACCGCAAGTCGACAATATCAGCAATGCTGTTAATGACTGTCATAAGGCCTATGAGTCTGCCTCCCCTACTAGCAAGGTGAAACAAGAGCCACCGGATGAGACTGCAGTACTCGCGGACCTTGGTGGAGGGGAAGTCCAAGATTTTAGGCCAGATGAAGGACATGATGTTGGACAGGTTGCCATGGATGAGGTAAATAAGGATCAGCTGGGCTACTCTTGGATTGACAGTTTCGATTTGGATGGTGATTACTTGGAGAGCTTTTCAACAGATGAGCTATTTCAAGTTGATGAACTTTTGGGGGATATAGACAACAATCCAATTGATAACTCTGGATTGATGCAAGGTTTGGATTTGGGTCAAATGGATCTCCCTATTGACAATAATCCTCTGGCTGAGATGCCTTCAAGCTATCTATACCAATTGCAGAATCCGGATGCCAAACTGCTGGGAAGTTTGCCCCATATGGAGCAAACACCATCAATTGTTGATTATGGATTAGATTTCTTGAAAGCAGAAGGGCCAGAGGACTATAATGTTGGAGGGGAAGACCAGCGGTTTCTCAACTTGGATTATCTGAACCATGATTCAAAAGGGAATATGCTAGCAGAGAAGGATGATTAG 1191 0.4601 MGAYDQGSNISLVPLDSSRKRKSRSRRDGSRSVAETLAKWKEYNEHLESGKEDAKPTRKAPAKGSKKGCMRGKGGPQNSQCKYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPEISDYESIKESLKDSSMAATSCSPSSSVATPAASDTTAISEVCAAEDVKVKPQVDNISNAVNDCHKAYESASPTSKVKQEPPDETAVLADLGGGEVQDFRPDEGHDVGQVAMDEVNKDQLGYSWIDSFDLDGDYLESFSTDELFQVDELLGDIDNNPIDNSGLMQGLDLGQMDLPIDNNPLAEMPSSYLYQLQNPDAKLLGSLPHMEQTPSIVDYGLDFLKAEGPEDYNVGGEDQRFLNLDYLNHDSKGNMLAEKDD* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0650 396 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 363 - -
Dod08g0650 396 MobiDBLite consensus disorder prediction 1 83 - -
Dod08g0650 396 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Dod08g0650 396 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 363 - -
Dod08g0650 396 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Dod08g0650 396 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Dod08g0650 396 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Dod08g0650 396 MobiDBLite consensus disorder prediction 17 60 - -
Dod08g0650 396 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Dod08g0650 396 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Dod08g0650 396 SUPERFAMILY DNA-binding domain 82 139 IPR016177 GO:0003677
Dod08g0650 396 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0650 Dod-Chr8 7656407 7658738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0650 8 389 AP2-EREBP Transcription Factor Family AT2G40340 39.119 1.40e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod08g0650 AP2 5.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0650 - K09286 gmx:100800134 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0650 08 7656407 7658738 Dod08g0650 08 7656407 7658738 ECH