LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod08g0599	ATGAGTTCGATTATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGGGTGTGTGGGCATTATCACAAGTACGAGGAAGGCGAAGTGTGTTCGATTTGCGGCCACAGGATTCCTGTCGGATCGGAGAAATCTTCGGTGCAAGTCAGTGCTTTCCCTTCGGTGATCCTGCCGGAGTTCCTTTACCTCGGAAGCTACGACAACGCTTCGCGCTCTGAGCTTCTAAAGACTCAGGGAATCTCTCGCATCCTTAATACTGTCCCTTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATTACTGCCTCCCAGATGACAAATCTTTACCATTTGATGAAGCAATTCAGTTTTTAGAGCAATGTGAGAAAGATAAGGCGCGTGTTCTGGTTCATTGCATGTCTGGAAAGAGTAGGTCTCCAGCTATCATTATTGCATACTTAATGAAGTCCAAAGGATGGAGATTTGCACAAAGTTATCAATGGGTAAAGGAGCGGAGACAGTCTGTCGAATTAACTGAAAGTGTCTACCAGCAACTGCAGGAGTACGAGAATATGATTTATGGATCGGTCGAAGGTGGCAGTCCTCTGCTGACTGGTTTCCCTCCTACCGGTTCAATCAGCTTTGGCTTCCCAAAGATCAGTGAGTCAGCTCCACTTCCTGCCTTCAGCACCGGAGCTACTTCGATTTTCGCTCAAGCACCCTTAAATGTTGGTCCTACCGAGTTTACATTTGGAGCCAGTCAGACGCAGACAGGTGTGACTGGAAGCCCGTTCAATGCGAATCGACCTAATCCAAATGGTACTGATATCCAAATGGATGGTTCTTGA	822	0.4659	MSSIMRKRERENPCGVCGHYHKYEEGEVCSICGHRIPVGSEKSSVQVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPSCQNLYKNSFTYYCLPDDKSLPFDEAIQFLEQCEKDKARVLVHCMSGKSRSPAIIIAYLMKSKGWRFAQSYQWVKERRQSVELTESVYQQLQEYENMIYGSVEGGSPLLTGFPPTGSISFGFPKISESAPLPAFSTGATSIFAQAPLNVGPTEFTFGASQTQTGVTGSPFNANRPNPNGTDIQMDGS*	274

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod08g0599	273	ProSitePatterns	Tyrosine specific protein phosphatases active site.	128	138	IPR016130	GO:0016311\|GO:0016791
	Dod08g0599	273	MobiDBLite	consensus disorder prediction	248	273	-	-
	Dod08g0599	273	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE IBR5	5	273	IPR044212	GO:0009734\|GO:0009738\|GO:0033549\|GO:0043407
	Dod08g0599	273	SMART	dsp_5	50	183	IPR020422	GO:0006470\|GO:0008138
	Dod08g0599	273	CDD	DSP_plant_IBR5-like	51	180	-	-
	Dod08g0599	273	Pfam	Dual specificity phosphatase, catalytic domain	59	182	IPR000340	GO:0008138\|GO:0016311
	Dod08g0599	273	Gene3D	Protein tyrosine phosphatase superfamily	44	189	IPR029021	-
	Dod08g0599	273	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	51	185	IPR029021	-
	Dod08g0599	273	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE IBR5	5	273	-	-
	Dod08g0599	273	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	50	186	IPR020422	GO:0006470\|GO:0008138
	Dod08g0599	273	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	107	175	IPR000387	GO:0016311\|GO:0016791

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod08g0599	5	170	Protein tyrosine phosphatase (PTP) family	AT2G04550	75.148	8.70e-97	280

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod08g0599	K04459		-	gmx:100806021	468.388

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod08g0599	08	7089748	7096898	Dod08g0599	08	7089748	7096898	ECH