Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0588 ATGCCAGAAAACAGGCAGGTTCTGAGGAATGCTGCTTCTAATCAATCCGGTGACAACATTGAAGAAGCGATTCGGCGATTGAAAATCAATGATAATCGCGATAGAGATGCCACAGGTCAATCTAACCAATACCCGGATCGACCTGGTGAACCTGACTGCTTATATTATTTGAGGACTGGGATATGTGGTTATGGAAGTAACTGTCGCTACAATCACCCTGCTCATGTTTCAATTGGTACTCATTATGGTGAAGAGCTCCCTGAGAGAGTTGGGCAACCTGATTGCGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAGGGACAGGCGAGGTGCTACTCCTGTATCATTCAATGCTTTAGGCCTGCCCATGCGCCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGAGTTGCTTGCAAGTTTAATCATCCCCCACATACTTCCTTTGGAGCTTCCCCAGTGGCTGGATCTCCTACCTCAACAATGATTCCTGCAACAGGATATGTTGGTGGATTTCCTGCGTGGCCATTACCGAGAATGTCTTATTTATCTGGGCAGGGCCTTCAATCTTATGTGCCTCCATGCTTTTCTTCACCGCAAGGGATTATACCTGCACAGAGTTGGAACAGCTACCTGGGAACTCTGAACCCTGCGATGTCTACTGGTTTTCTTGGGTCTAATCTTGTTTACGACTCCATGAATCTGGGTGAGTCACTTTCTGGTGGGCAGGTAATGAGTCCAATTCTCCCAGATAGACCTGATCAACCAGAATGTAGATACTTTATGAACACTGGAACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAAGAAAGAATTGCCCAATCATTCATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGTTCTTATTACAAAATCTATGGAATATGCAAGTATGGCCCAACATGCAAATTTGATCATCCAGTTGTGGCAGTCCCTCAGAACTATGGCACGGCCACACCTGCTTTATCTGTACTTGATACAACTCTCATCAGTAATCCTAGAGGGACTGTCCAACCACCTGATCAGACATCCCCATCTAAATTATCAAGTGTCAAGCATCAGCACTCTGATGCAGCAAAAGCTACAGAAGATTCATCCAAACAGGCTGATCACACAACATCAAATTCCATCCCAGCCTCCTCAGAGTCCTTACATGACCAAACTGCCTGA 1260 0.45 MPENRQVLRNAASNQSGDNIEEAIRRLKINDNRDRDATGQSNQYPDRPGEPDCLYYLRTGICGYGSNCRYNHPAHVSIGTHYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPRDRRGATPVSFNALGLPMRQEEKSCPYYMRTGSCKFGVACKFNHPPHTSFGASPVAGSPTSTMIPATGYVGGFPAWPLPRMSYLSGQGLQSYVPPCFSSPQGIIPAQSWNSYLGTLNPAMSTGFLGSNLVYDSMNLGESLSGGQVMSPILPDRPDQPECRYFMNTGTCKYGSDCKFHHPKERIAQSFINPLGLPVRPGQAVCSYYKIYGICKYGPTCKFDHPVVAVPQNYGTATPALSVLDTTLISNPRGTVQPPDQTSPSKLSSVKHQHSDAAKATEDSSKQADHTTSNSIPASSESLHDQTA* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0588 419 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Dod08g0588 419 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Dod08g0588 419 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Dod08g0588 419 SMART c3hfinal6 268 295 IPR000571 GO:0046872
Dod08g0588 419 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Dod08g0588 419 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Dod08g0588 419 MobiDBLite consensus disorder prediction 398 419 - -
Dod08g0588 419 PANTHER PROTEIN PHOSPHATASE RELATED 4 394 - -
Dod08g0588 419 MobiDBLite consensus disorder prediction 383 397 - -
Dod08g0588 419 MobiDBLite consensus disorder prediction 361 382 - -
Dod08g0588 419 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Dod08g0588 419 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Dod08g0588 419 MobiDBLite consensus disorder prediction 361 419 - -
Dod08g0588 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Dod08g0588 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Dod08g0588 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 295 IPR000571 GO:0046872
Dod08g0588 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 313 337 IPR000571 GO:0046872
Dod08g0588 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Dod08g0588 419 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 4 394 - -
Dod08g0588 419 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Dod08g0588 419 Gene3D - 42 119 - -
Dod08g0588 419 Gene3D - 266 344 - -
Dod08g0588 419 SUPERFAMILY CCCH zinc finger 272 297 IPR036855 GO:0046872
Dod08g0588 419 Gene3D - 120 168 - -
Dod08g0588 419 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Dod08g0588 419 SUPERFAMILY CCCH zinc finger 309 337 IPR036855 GO:0046872
Dod08g0588 419 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Dod08g0588 419 SUPERFAMILY CCCH zinc finger 133 161 IPR036855 GO:0046872
Dod08g0588 419 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0588 Dod-Chr8 6989223 6993814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0588 1 342 C3H Transcription Factor Family AT1G04990 50.141 4.87e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod08g0588 zf-CCCH 9.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0588 - - vra:106765262 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0588 08 6989223 6993814 Dod08g0588 08 6989223 6993814 ECH