Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0563 ATGGACATGATGATGAACATTGATACCAATAACAATAGGAAGCTTCTTTCTATGCCTCCTAGCAACAATTCTGGTGCCCAAAACAGAAGGGTTTCTGTGTTGAACATGGCCCAAGATCATCACAACAATACTTGCAGCAGTAGTAGCAGTACTGGTGTGAGGGACAAGATCATGGCACACCCTCTCTTCCCTCGTCTCTTGTCCTCTTACCTCAATTGCCTCAAGGTTGGAGCACCACCTGAAGTGGTCGCTAGGTTAGAGGAGTTAAGTGCAAAATGTGAATCATCATCATCGCATCATGTATCTGACAAGACTGGTTCCATAGGTGAAGATCCAGCACTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATCAAGTATGAGCAAGAGCTCACAAAACCCTTCAAAGAAGCCATGCTTTTCTTCTCAAGAATTGAGTGTCAGCTTAAGGCTCTTTCAGTCTCAACAGACTTTGGTCAAAGTGAATCATCTTTACACAATGGGGTTGATGTGCTTGAAAACAACATGGATACTCAGGCTGAAGACAGGGAACTAAAAATCCAGCTTTTGCGCAAGTACAGTGGGTATCTAGGGGGCCTCAAGAAGGAGTTTTTGAAGAAGAAGAAGAATGGAAAGTTGCCAAAAGAAGCTCGGCAGCAGCTACTAGATTGGTGGAACAGACATTACAAATGGCCTTATCCATCGGAATCCCAGAAGCAGGCACTTGCAGAAACCACTGGCCTAGATCTGAAGCAGATAAACAACTGGTTCATCAATCAGAGAAAACGCCATTGGAAGCCTTCCGAGGATATGCAGTTTGCTGTGATGGATGCAACTAACCACTACATGGAAAGTATTATGTGCAAGCCATTTCCCATGGATGTCATGCCTGTGCTTTTTTAA 906 0.4448 MDMMMNIDTNNNRKLLSMPPSNNSGAQNRRVSVLNMAQDHHNNTCSSSSSTGVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVARLEELSAKCESSSSHHVSDKTGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALSVSTDFGQSESSLHNGVDVLENNMDTQAEDRELKIQLLRKYSGYLGGLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAETTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNHYMESIMCKPFPMDVMPVLF* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0563 301 Pfam KNOX1 domain 53 94 IPR005540 GO:0003677|GO:0005634
Dod08g0563 301 Pfam Homeobox KN domain 225 264 IPR008422 GO:0003677|GO:0006355
Dod08g0563 301 ProSiteProfiles 'Homeobox' domain profile. 205 268 IPR001356 GO:0003677
Dod08g0563 301 CDD homeodomain 217 269 IPR001356 GO:0003677
Dod08g0563 301 SMART KNOX1_2 51 95 IPR005540 GO:0003677|GO:0005634
Dod08g0563 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 292 - -
Dod08g0563 301 ProSiteProfiles ELK domain profile. 185 205 IPR005539 GO:0003677
Dod08g0563 301 Pfam ELK domain 185 206 IPR005539 GO:0003677
Dod08g0563 301 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 4 292 - -
Dod08g0563 301 Gene3D - 203 277 - -
Dod08g0563 301 ProSitePatterns 'Homeobox' domain signature. 243 266 IPR017970 GO:0000981|GO:0006355
Dod08g0563 301 Pfam KNOX2 domain 107 153 IPR005541 GO:0003677|GO:0005634
Dod08g0563 301 SMART HOX_1 207 272 IPR001356 GO:0003677
Dod08g0563 301 MobiDBLite consensus disorder prediction 1 27 - -
Dod08g0563 301 SUPERFAMILY Homeodomain-like 207 278 IPR009057 -
Dod08g0563 301 SMART ELK_2 185 206 IPR005539 GO:0003677
Dod08g0563 301 SMART KNOX2_2 104 155 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0563 Dod-Chr8 6394781 6398674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0563 53 295 Homeobox Transcription Factor Family AT1G62360 65.759 4.53e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod08g0563 KNOX2 3.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0563 - - gmx:100791704 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0563 08 6394781 6398674 Dod08g0563 08 6394781 6398674 ECH