Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0506 ATGGATGAGTTTGGTGCAAATGGGAATGGGAACGAGGATTCTCTGCCACCACCACCACCTGTGGTGCCAGCAGATGTTGTCCCAGTCAAAGCGGAAGAGGAGCTTCCTAAGAAGAAGGACCGGGTGCCCATGGCCAGACGCGGCATGGGAACCAAGGGGACAAAGCTGAATCTCCTGACCAACCATTTCAAAGTGAATGTGAACAACAACGATGGAGAGTTCTATCAGTACAGTGTATCACTTTCTTATGAAGATGGACGCCCTGTAGAGGGTAAGGGTGCTGGGAGGAAAGTATTGGACAAAGTCAAGGAAACTTATGACTCTGAGTTGAATGGGAAGGACTTTGCCTATGATGGTGAAAAAACCTTGTTCACTGTTGGCTCTCTTGCTCGAAACAAGCTCGAGTTTACAGTTGTTCTTGAGGATGTGACTTCAAACAGAAACAATGGAAACTGCAGCCCTGATGGCCGTGGAAGTCCAAATGAGAGTGACAGGAAGAGGACGCGGCGCCCCTACCGTGCCAAGACATTTAAGGTTGAGATCAGCTATGCTTCCAAAATTCCGATGAAGGCCATAACCAACGCCCTACGTGGGCATGAAACAGAGAATTTCCAAGAAGCCATCAGAGTGCTTGATATTGTATTGAGACAACATGCTGCCAAGCAAGGCTGCCTACTAGTCCGCCAATCATACTTTCACAATAATCCCAAGAATTTTGCAGATGTAGGTGGTGGTGTATTAGGTTGCAGAGGTTTCCATTCAAGTTTTAGAACTACCCAGAGTGGCCTATCCCTTAATATAGATGTCTCAACTACAATGATAATTCAACCTGGGCCTGTGGTTGACTTTCTGATTTCCAATCAAAATGTGAGAGATCCTTATCAAATTGACTGGGCAAAGGCCAAGAGGACACTCAAGAATTTGAGGATCAAAACCAACCCTTCCAATCAGGAGTTCAAGATTACTGGTCTCAGTGAACAACCTTGCAAAGAGCAGACGTTTACATTGAAGACCAAAGGTGGAGCAGATGGTGATGAGCAGGAAGTGACAGTTTATGACTATTTTGTGAAACATCGCAATATTGATCTCCGTTACTCAGGTGATCTTCCATGTATTAATGTTGGAAAGCCAAAAAAGCCAACTTATTTTCCCCTTGAGCTTTGCGATCTGGTATCCCTTCAAAGGTATACAAAAGCACTGTCAACACTTCAAAGAGCTTCTTTGGTGGAAAAATCCAGGCAAAAACCACAAGAGAGGATGAGGGTTTTGTCTGATGCTCTAAAAACTAGCAACTATGGCAGTGAACCCATGCTGCGTAATTGCGGAATTCAAATAAGCTCGAGCTTTACTCCAGTGGATGGTCGTGTTTTGCAAGCTCCAAGGCTTAAGTTTGGCAATGGTGAAGATTTCAACCCTAGAAATGGGAGGTGGAACTTTAATAATAAGAAAATAGTTCAACCAACAAAGATAGAGAGGTGGGCTGTTGTTAACTTCTCTGCACGCTGTGATGTTAATGGGCTTGTCAGAGACCTGATTAAGTGTGGTGGAATGAAAGGAATTATGATAGACCAACCATTTGATGTATTCGAAGAAAATGGTCAATTTAGGCGTGCCCCACCCCTAGTTCGGGTGGAGAAGATGTTTGAGAACATTCAGTCTAAACTCCCTGGGGCTCCTCAGTTCCTTCTATGTATTCTTCCTGAGCGGAAGAACTCTGAGCTTTATGGTCCATGGAAGAAGAAAAATCTTGCTGATTTTGGAATCGTGACTCAGTGCATAGCTCCTACAAGGGTCAATGACCAATATCTCACAAATGTTTTGTTGAAGATCAATGCCAAGCTTGGTGGGTTGAATTCAATGCTAGGTGTTGAACATTCTCCTTCTATTCCTATTGTTTCTAAAGCTCCCACAATCATTCTGGGGATGGATGTTTCGCATGGCTCACCTGGACAATCTGATATTCCTTCAATTGCTGCTGTGGTGAGCTCTAGACAATGGCCATTGATATCCAAGTATAGGGCATGCGTTCGTACCCAGTCTCCTAAGGTTGAAATGATTGATAATTTATTTAAGCAAGTATCTGACAAGGAAGATGAAGGCATCATCAGGGAACTTTTAATTGACTTTTATACCAGTTCTGGAAAGAGAAAACCAGAAAATATAATTATATTCAGGGATGGTGTTAGTGAGTCTCAGTTCAACCAAGTTTTGAACAAAGAACTTGATCAAATCATTCAGGCTTGTAAATTTCTTGATGAAACTTGGAACCCCAAGTTTTTGGTAATTGTTGCTCAAAAGAATCACCACACAAAATTCTTCCAGCAGGGATCCCCTGATAATGTTCCTCCAGGAACTGTTATTGATAATAAAATTTGTCATCCTCGGACTTATGATTTCTACTTGTGTGCCCATGCTGGAATGATTGGTACCACTAGGCCTACGCACTATCATGTTCTGCTGGATGAGATTGGTTTCTCCACAGATGATCTCCAGGATCTTGTTCATTCTTTATCATATGTGTACCAGAGGAGTACTACTGCCATATCTGTTGTTGCTCCTATATGCTATGCTCACTTGGCTGCAACTCAGCTGGGACAGTTTATGAAATTTGAGGAAAAATCTGAGACCTCTTCAAGCCATGGTGGACTCACTGCTGCTGGAGCTGTTCCTGTCCCGCAGTTGCCCAAACTGCAGGAGAATGTCTGCAACTCTATGTTCTTTTGTTGA 2727 0.432 MDEFGANGNGNEDSLPPPPPVVPADVVPVKAEEELPKKKDRVPMARRGMGTKGTKLNLLTNHFKVNVNNNDGEFYQYSVSLSYEDGRPVEGKGAGRKVLDKVKETYDSELNGKDFAYDGEKTLFTVGSLARNKLEFTVVLEDVTSNRNNGNCSPDGRGSPNESDRKRTRRPYRAKTFKVEISYASKIPMKAITNALRGHETENFQEAIRVLDIVLRQHAAKQGCLLVRQSYFHNNPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLISNQNVRDPYQIDWAKAKRTLKNLRIKTNPSNQEFKITGLSEQPCKEQTFTLKTKGGADGDEQEVTVYDYFVKHRNIDLRYSGDLPCINVGKPKKPTYFPLELCDLVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLSDALKTSNYGSEPMLRNCGIQISSSFTPVDGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVQPTKIERWAVVNFSARCDVNGLVRDLIKCGGMKGIMIDQPFDVFEENGQFRRAPPLVRVEKMFENIQSKLPGAPQFLLCILPERKNSELYGPWKKKNLADFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSMLGVEHSPSIPIVSKAPTIILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSPKVEMIDNLFKQVSDKEDEGIIRELLIDFYTSSGKRKPENIIIFRDGVSESQFNQVLNKELDQIIQACKFLDETWNPKFLVIVAQKNHHTKFFQQGSPDNVPPGTVIDNKICHPRTYDFYLCAHAGMIGTTRPTHYHVLLDEIGFSTDDLQDLVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEEKSETSSSHGGLTAAGAVPVPQLPKLQENVCNSMFFC* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0506 908 ProSiteProfiles PAZ domain profile. 313 392 IPR003100 GO:0005515
Dod08g0506 908 MobiDBLite consensus disorder prediction 1 37 - -
Dod08g0506 908 CDD Piwi_ago-like 436 863 IPR045246 -
Dod08g0506 908 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 907 - -
Dod08g0506 908 Gene3D paz domain 271 396 - -
Dod08g0506 908 SUPERFAMILY Ribonuclease H-like 545 867 IPR012337 -
Dod08g0506 908 Pfam Argonaute linker 2 domain 418 464 IPR032472 -
Dod08g0506 908 SMART DUF1785_2 225 277 IPR014811 -
Dod08g0506 908 Pfam N-terminal domain of argonaute 55 215 IPR032474 -
Dod08g0506 908 Gene3D - 628 908 IPR036397 GO:0003676
Dod08g0506 908 Pfam PAZ domain 281 408 IPR003100 GO:0005515
Dod08g0506 908 Gene3D - 456 622 - -
Dod08g0506 908 SUPERFAMILY PAZ domain 272 432 IPR036085 GO:0005515
Dod08g0506 908 MobiDBLite consensus disorder prediction 147 171 - -
Dod08g0506 908 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 3 907 - -
Dod08g0506 908 Pfam Piwi domain 562 869 IPR003165 GO:0003676
Dod08g0506 908 SMART Piwi_a_2 561 869 IPR003165 GO:0003676
Dod08g0506 908 CDD PAZ_argonaute_like 277 391 - -
Dod08g0506 908 ProSiteProfiles Piwi domain profile. 561 869 IPR003165 GO:0003676
Dod08g0506 908 Pfam Argonaute linker 1 domain 227 275 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0506 Dod-Chr8 5685361 5693300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0506 24 908 Eukaryotic Initiation Factors Gene Family AT5G43810 35.071 3.98e-164 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0506 K11593 - gmx:100779439 1588.55