Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0501 ATGGCCAAGAAGCGAAAGCTTCGTTCCTCCGACCCCGACCCCGAACCCGCCAAACCCCTCGACCAAAACCAAGACCAACAACAACAACAGCAACCTCAACCCGAACAACAACTAACCCTAGATCAACAACAACAACAACAACAACAGCAACAACAACAAAACATGGCCCTCGACGACCCTGAGCCACGACAAAACGAACCTCCAAACGTCGTCGTAGAAGAAGAAGAACAACAGCAAGAAGAAGAAGAAGAAGAACAAGAACAAGACGACGAAGGAGGAGAAGAAGAAGAAGAGGAGGAAGAAACAGAAACCCTAGAAAACCAAGAGCAAGCTTCCGGTTCGGAATTGGTTCGTGCCGAATCGAACGGCGCGGAGGCTTCTGCTGCGGCTGCGGCGGCAGCAGCGGAGGAGCCAGAAGAGGACCTCGAATTGGAAGACGAGCCCGTCGAGAAGCTTCTAGAACCTTTCACGAGGGAGCAGCTCCACTCCCTCGTGATGAAGGCCGTCGAGAAGCACCCCGATTTCGCGGAAAGCGTCCGCGAGCTGGCAGAGGTGGACCCCGCTCACCGCAAGATCTTTGTCCACGGCCTCGGCTGGGACACAACCGCCGAAACCCTAACCGCCGTCTTCGGAAAATACGGGGAAATCGAGGATTGCAAGGCTGTGACAGATAAAGTCTCGGGAAAATCGAAGGGCTACGCTTTCATTCTGTTCAAGAACCGAATTGGGGCTCGCAGGGCGCTGAAGCAGCCGCAGAAGAGGATTGGAAACAGAACGACGTCGTGTCAATTGGCCTCTGCGGGACCTGTCCCCGCTCCGCCCCCGAATGTGCCTCCGGTTGTGTCGGAATACACACAGAGGAAGATCTTTGTGAGCAATGTGAGTGCTGAGATTGATCCCCAGAAGCTGCTCGAGTTCTTCAAGCAGTTTGGGGAGGTTGAAGATGGGCCTCTTGGGCTTGATAAGATCACAGGGAAGCCCAAAGGGTTCGCGCTTTTTGTGTACAAGACTGTGGACAGTGCAAAGAAGGCTTTGGAGGAGCCGCATAAGAATTTCGAAGGGCATACCCTTTATTGTCAGAAGGCTGTTGATGGCCCTAAAGGGAACAAAGGGTATCATCAGTATCAACACCATCATCAGCAGCATCATCAGCACCATTCTCATCACCATCACCAGGGTCACTATCATAGGAAGGATAAGAGCAAGTATTCTGGTGCGCCTGCCCATGGTGCTGGTGGTGGTCACTTGATGGCGCCGTCTGCAGCAGCGGGGGCGGCTCCCGCTGGTGTTGGGGGATACAATCCTGGTGTGCCGCCGGCAGCGCAGGGGCTGAACCCGGCGTTGGGGCAGGCGCTTACTGCTTTGCTTGCTAATCAGGGTGCTGGATTGGGGCTTGGGAATTTGCTTGGTGGGCTTGGTGGTGCACCTGTGAACCAGCCTGGTCCACCTGCTGGTGCGTATGCGAATCAGCCTGGTATGGGATATGGGAACCAGCCCGGGATGCAGCCTGGGTATCAGAATCCTCAGATGGGGCAGAGCAGTGGCGTTAGGCCTCACCCTGGTGCTGGAGCTCCTTACATGGGTCATTAG 1590 0.5509 MAKKRKLRSSDPDPEPAKPLDQNQDQQQQQQPQPEQQLTLDQQQQQQQQQQQQNMALDDPEPRQNEPPNVVVEEEEQQQEEEEEEQEQDDEGGEEEEEEEETETLENQEQASGSELVRAESNGAEASAAAAAAAAEEPEEDLELEDEPVEKLLEPFTREQLHSLVMKAVEKHPDFAESVRELAEVDPAHRKIFVHGLGWDTTAETLTAVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKNRIGARRALKQPQKRIGNRTTSCQLASAGPVPAPPPNVPPVVSEYTQRKIFVSNVSAEIDPQKLLEFFKQFGEVEDGPLGLDKITGKPKGFALFVYKTVDSAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQYQHHHQQHHQHHSHHHHQGHYHRKDKSKYSGAPAHGAGGGHLMAPSAAAGAAPAGVGGYNPGVPPAAQGLNPALGQALTALLANQGAGLGLGNLLGGLGGAPVNQPGPPAGAYANQPGMGYGNQPGMQPGYQNPQMGQSSGVRPHPGAGAPYMGH* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0501 529 MobiDBLite consensus disorder prediction 368 415 - -
Dod08g0501 529 SUPERFAMILY RNA-binding domain, RBD 272 383 IPR035979 GO:0003676
Dod08g0501 529 MobiDBLite consensus disorder prediction 1 15 - -
Dod08g0501 529 CDD RRM_RBM24_RBM38_like 190 265 - -
Dod08g0501 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 365 IPR000504 GO:0003723
Dod08g0501 529 SMART rrm1_1 288 360 IPR000504 GO:0003723
Dod08g0501 529 SMART rrm1_1 191 263 IPR000504 GO:0003723
Dod08g0501 529 Coils Coil 69 92 - -
Dod08g0501 529 MobiDBLite consensus disorder prediction 20 59 - -
Dod08g0501 529 CDD RRM_RBM24_RBM38_like 287 362 - -
Dod08g0501 529 Gene3D - 69 272 IPR012677 -
Dod08g0501 529 Gene3D - 280 405 IPR012677 -
Dod08g0501 529 MobiDBLite consensus disorder prediction 481 529 - -
Dod08g0501 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 267 IPR000504 GO:0003723
Dod08g0501 529 SUPERFAMILY RNA-binding domain, RBD 182 271 IPR035979 GO:0003676
Dod08g0501 529 MobiDBLite consensus disorder prediction 372 398 - -
Dod08g0501 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 357 IPR000504 GO:0003723
Dod08g0501 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 259 IPR000504 GO:0003723
Dod08g0501 529 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 516 - -
Dod08g0501 529 MobiDBLite consensus disorder prediction 500 514 - -
Dod08g0501 529 MobiDBLite consensus disorder prediction 1 145 - -
Dod08g0501 529 MobiDBLite consensus disorder prediction 73 106 - -
Dod08g0501 529 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0501 Dod-Chr8 5660389 5662077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0501 283 366 C2H2 Transcription Factor Family AT2G19380 30.952 8.27e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0501 K12741 - gmx:100792637 545.043