Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0485 ATGAAGGAGTCACCTTCTACAAGTGGTGAAAATAAGCTGAAGGATGCATGTGATGTAGAGTCAGGTGCGAAACCAGTTGCACCAATGCGTGAGTGTGAGTTTTGTGGCAAAAAGTTCAGCTCCGGAAAGGCCTTAGGTGGCCATAAGAGGTTCCACCTTCAAACTCAAAGGAAAGAGAGAGAATTAGCTAACAAGGCTAACAATTGTGGTGGAAATAATGGTGGTGGTAGCAGCATCAAGTTGTTTCCTTTGAATTCTGATGAGAGGCTCCGTTGTTACATTTGCAGCAAAGATTTTCCATCAGAGAAATCTCTTTTTGGACACATGAGGTCCCATCCTGATAGGGACTGGAGGGGTGTCCACCCACCTGCATCCTCTGATGATAAAGAGACACAATCTTGTTCCCCCAATTCTGATAATTCCATGGAGTGGAATGATAATTGTTCTAGTGCAAATGCTGCAACAACTAAACCAACTATTGATATATCAAAGTCCTTGCCACCAACCTGGCTAAAGACTGATATACGAGGCAGGGAAAGTCTCTGGGCTGGAGCTGTTCGAGTACTTGTGTCTTTGGTTGATGAATTGCATAATAATGTCAATCTCCAACAAGATGGTGACTTTGATAGTGAGAGGCTGAATAGTGATGAGGATGGGGGTAATGGAAAAAATGAGGATGGTGATGAGAAAGAGGAGGAGTTTAATTGGATTAAAAAGGAAAGTAGTTTGAATAATATGAAAGGAGCATTGGATGGTGTGAAAACTAAAGTTACAAATCATGTTGGTCATGTTGATGAAGGAGTGGTGATGATGGAGGAAAGTAAGAAAAGAAAGTTGGTAGTGAGATTCAAGACTCATCATTACTCAGAACATGAAGATGAGAAAAATTTAGAGACCCTACTAGATGGCTACCAGTGCAACATTTGTAACAAGTCTTTCCCAACATTTCAAGGCCTAAGAGGACACAGGTCAAGCCACAATAAAGAGAAGAACAAAAGTATCATGGATGATCAGAGGCCTTCGAATATCATAGGAGAATCAAGTCAAGCTAGGTCAAAAACTCCTCGAAACTTTGATCTAAATGAGCTGCCAGATAATATAAAGGATGAAGAAAATTAG 1119 0.4084 MKESPSTSGENKLKDACDVESGAKPVAPMRECEFCGKKFSSGKALGGHKRFHLQTQRKERELANKANNCGGNNGGGSSIKLFPLNSDERLRCYICSKDFPSEKSLFGHMRSHPDRDWRGVHPPASSDDKETQSCSPNSDNSMEWNDNCSSANAATTKPTIDISKSLPPTWLKTDIRGRESLWAGAVRVLVSLVDELHNNVNLQQDGDFDSERLNSDEDGGNGKNEDGDEKEEEFNWIKKESSLNNMKGALDGVKTKVTNHVGHVDEGVVMMEESKKRKLVVRFKTHHYSEHEDEKNLETLLDGYQCNICNKSFPTFQGLRGHRSSHNKEKNKSIMDDQRPSNIIGESSQARSKTPRNFDLNELPDNIKDEEN* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0485 372 MobiDBLite consensus disorder prediction 126 153 - -
Dod08g0485 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 304 331 IPR013087 -
Dod08g0485 372 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 11 366 IPR044653 GO:0003700
Dod08g0485 372 SMART c2h2final6 304 326 IPR013087 -
Dod08g0485 372 SMART c2h2final6 30 52 IPR013087 -
Dod08g0485 372 SMART c2h2final6 90 112 IPR013087 -
Dod08g0485 372 MobiDBLite consensus disorder prediction 322 336 - -
Dod08g0485 372 ProSitePatterns Zinc finger C2H2 type domain signature. 306 326 IPR013087 -
Dod08g0485 372 SUPERFAMILY beta-beta-alpha zinc fingers 31 112 IPR036236 -
Dod08g0485 372 SUPERFAMILY beta-beta-alpha zinc fingers 303 331 IPR036236 -
Dod08g0485 372 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Dod08g0485 372 MobiDBLite consensus disorder prediction 209 232 - -
Dod08g0485 372 MobiDBLite consensus disorder prediction 203 232 - -
Dod08g0485 372 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 11 366 - -
Dod08g0485 372 Pfam C2H2-type zinc finger 31 54 - -
Dod08g0485 372 Pfam C2H2-type zinc finger 91 114 - -
Dod08g0485 372 Pfam C2H2-type zinc finger 304 328 - -
Dod08g0485 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Dod08g0485 372 Gene3D Classic Zinc Finger 30 112 - -
Dod08g0485 372 MobiDBLite consensus disorder prediction 105 125 - -
Dod08g0485 372 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Dod08g0485 372 MobiDBLite consensus disorder prediction 316 372 - -
Dod08g0485 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Dod08g0485 372 MobiDBLite consensus disorder prediction 337 356 - -
Dod08g0485 372 Gene3D Classic Zinc Finger 273 359 - -
Dod08g0485 372 MobiDBLite consensus disorder prediction 105 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0485 Dod-Chr8 5518933 5520051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0485 32 127 C2H2 Transcription Factor Family AT2G26940 37.736 3.06e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod08g0485 zf-C2H2_6 2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0485 - - adu:107496635 246.514