Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0480 ATGTCAAGTGGAGCAACACACTGGTGTTATTCATGCAGGCAGCCAATAGTTGCACTTGGAGGGAGAGATGTCATCTGTCCCTACTGTGATGGAGGATTCGTGCAAGAACTTGATGAGTTGCGAGGATTTCCACCCCCACATGCTTTTTCATCACACCCGGGAGAGTTTCATCAAATGCCCGATATTTTTGATGCTATACATGCTTTTATGGGGCGGAGAGGTTCTGATCCACGACTTCGGTTCGCCGATGCTATGGATACTTTCATGAGGCAGAGAATGGCTGGAGGACACCCAAATTTTGATGTCAGAGGGAGGTCTGGTTCTGCCCCAGTTCCTGAACAGGGTTGGGGTGTTTTTAGTTCTGGTCCTTATTTGATAGTTCATGGTCAAGTTCCTGGATTCACCTTGTCTAGTGGCAGCCCAAGAGGTGGTCCCAGGCGTCTTGATTTTGGTGACTACTTTATGGGCCCTGGACTAGAAGAACTTATGGAGCAACTCACCGTGAATGAGCGGCGGGGTCCGCCCCCAGCTGCACGTTCTTCAATTGATGCAATGCCTACAATCAAGATCACAAATGTGCATCTTCGCTCGGATTCACACTGTCCAGTTTGCAAAGAAAAGTTTGAACTGGGCTCTGATGCCAGAGAGATGCCATGTAACCATATATACCACTCTGATTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCCCCTCAAGGACATGCTAGTTTTCATGGTAGTCGAAATGGGGGTGGAAGAAGCACCAACACCAGTGGCGGCAATGATAGCTCCAGGGGCAGGGAAAATGGCCATCAGAGCAACGGAAGGAGAAATCCATTTTCATTTTTGTGGCCATTCCGTTCTTCTAGTTCGAACAACAATCATTATGCTGAGAATGAGGGAAGCAGCTCTTCAACCTCTTCTGAGAATAATGGAGCACGACATAATGGATGGCACTTCAATTACTAG 996 0.4779 MSSGATHWCYSCRQPIVALGGRDVICPYCDGGFVQELDELRGFPPPHAFSSHPGEFHQMPDIFDAIHAFMGRRGSDPRLRFADAMDTFMRQRMAGGHPNFDVRGRSGSAPVPEQGWGVFSSGPYLIVHGQVPGFTLSSGSPRGGPRRLDFGDYFMGPGLEELMEQLTVNERRGPPPAARSSIDAMPTIKITNVHLRSDSHCPVCKEKFELGSDAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHASFHGSRNGGGRSTNTSGGNDSSRGRENGHQSNGRRNPFSFLWPFRSSSSNNNHYAENEGSSSSTSSENNGARHNGWHFNY* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0480 331 PANTHER OS03G0351800 PROTEIN 1 315 - -
Dod08g0480 331 MobiDBLite consensus disorder prediction 257 288 - -
Dod08g0480 331 CDD RING-H2_RNF126_like 201 242 - -
Dod08g0480 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 315 - -
Dod08g0480 331 MobiDBLite consensus disorder prediction 252 288 - -
Dod08g0480 331 SUPERFAMILY RING/U-box 181 248 - -
Dod08g0480 331 MobiDBLite consensus disorder prediction 302 331 - -
Dod08g0480 331 Pfam Ring finger domain 200 242 IPR001841 -
Dod08g0480 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 248 IPR013083 -
Dod08g0480 331 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Dod08g0480 331 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Dod08g0480 331 SMART ring_2 201 241 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0480 Dod-Chr8 5481156 5484341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0480 145 258 C3H Transcription Factor Family AT5G01980 43.103 1.89e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0480 K11982 - gmx:100813674 545.043