Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod08g0453 | ATGGCGACGATAAGCCTCCGGAAGGGGAACACGCGGCTTCCGCCAGAGGTGAACCGCGTTCTCTACGTCCGCAACCTCCCGTTCAACATCACCAGCGAGGAGATGTACGACATCTTCGGGAAGTACGGCGCGATTCGGCAGATCCGGATCGGGACGAACAAGGACACGCGCGGCACCGCCTTCGTGGTGTACGAGGACATCTACGACGCGAAAACAGCCGTGGACCACCTTTCAGGGTTCAACGTCGCGAACCGGTACCTGATCGTGCTGTATTACCAGCAGGCAAAGATGAGCAAGAAGTTCGATCAGAAGAAGAAGGAGGACGAGATCGCTAAGATGCAGGAGAAGTACGGTGTTTCCACAAAAGATAAGTAG | 375 | 0.5573 | MATISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIAKMQEKYGVSTKDK* | 125 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod08g0453 | 124 | SMART | rrm1_1 | 20 | 90 | IPR000504 | GO:0003723 | |
Dod08g0453 | 124 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 21 | 87 | IPR000504 | GO:0003723 | |
Dod08g0453 | 124 | CDD | RRM_SF3B14 | 17 | 93 | IPR034150 | - | |
Dod08g0453 | 124 | PANTHER | SPLICING FACTOR 3B | 5 | 116 | - | - | |
Dod08g0453 | 124 | SUPERFAMILY | RNA-binding domain, RBD | 7 | 102 | IPR035979 | GO:0003676 | |
Dod08g0453 | 124 | PANTHER | SPLICING FACTOR 3B SUBUNIT 6 | 5 | 116 | - | - | |
Dod08g0453 | 124 | Gene3D | - | 15 | 121 | IPR012677 | - | |
Dod08g0453 | 124 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 19 | 94 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod08g0453 | Dod-Chr8 | 4902264 | 4903083 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod08g0453 | 21 | 109 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 31.868 | 6.41e-07 | 45.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod08g0453 | K12833 | - | cpap:110807971 | 247.284 |