Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0437 ATGTGGCCATCCTCCGCCCACGCCGCAGCAGCTGCAGCCAGGTCCCTCAACTACGGCCTCGCACCTCCCGACATGGCCGCCGCCGGCATGGTCGGTCTCCGAGACGTATTCGTCGTTGCCCCCGCCTCCTCCTTCCACCACCACTCCCACCACCATAGCCACCAAAACGACACCGTTTTGTCCTCCGATCTTCATTCTCTCAACAACTCTAACTCCAACAACAACCCCGCAACTGCACTCGGTGTTGGCGTTGGCGTTGGCGTTATCCCTCTCCTCACCGCAACGCCATGCCTTGAAAACGAAAACATGTTGAGAAGCAGAAGCAGTGGTGGTGGAATTCAGTTCTGGCAGGATCAACAACCTCATCACTACATGAAGAATAAACAGGGTCTAATAGATCACAGTAGTGTGAATTTGCTTCAGAGCGGTGGTGGTGGTGGTGGAGGTGGAGGAGGAGGGATGAGTGGTGGTTCAAGTAGTGGTGGTGGTGGTGGAACCACAACCTGTCAAGATTGTGGGAACCAAGCCAAGAAAGATTGTACTCATAGGAGGTGCAGGACTTGTTGCAAGAGTAGGGGTTTTGATTGCCCTACTCACGTGAAGAGCACGTGGGTTCCGGCTGCACGGCGGAGGGAGCGGCAGCTCATGGCTTCGGCCGCTGCTACCACGGCTGTGGTGGCAGGTGGCGGTTCTAGTGGTTCAACTTCTGGTGCCAAGAAACCTAGGCTCATTGCTTCTCAGACTACTACTAATTCTCACACCTCAACTTCTAACACAACTCCTCCTAGAAGTTTTGACACTAGTTCTAGCCACCAAGATGCCAGTTTCAAAGAGAAATTGCCTGGTCAAATACGTGCACCTGCAGTGTTCAAGTGTGTCCGGGTGACGTCAGTGGATGATGGACAAGATGAGTACGCCTATCAAGCTGTTGTGAGGATTGGTGGCCATGTGTTCAAAGGGTTTCTCTATGATCAAGGAGTGGAGAATAGGGATGTGTATCCTAATCTTTCTGAGCTGCATTTGGGGGGTGGTGGTGGAAGTGGAAGTGGTGGTAGTGGTGGTGGTGGTGGAGGTGGGAGAAATGGGGTCTCTTCTTCATCCCCAATGCTTGATCCTTCTGATGTTTATGCTGCTTCAGGTGGGGGATTGCTGGGAGGGTCAACCTATGGTAATCCAATAAATTGA 1185 0.5266 MWPSSAHAAAAAARSLNYGLAPPDMAAAGMVGLRDVFVVAPASSFHHHSHHHSHQNDTVLSSDLHSLNNSNSNNNPATALGVGVGVGVIPLLTATPCLENENMLRSRSSGGGIQFWQDQQPHHYMKNKQGLIDHSSVNLLQSGGGGGGGGGGGMSGGSSSGGGGGTTTCQDCGNQAKKDCTHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMASAAATTAVVAGGGSSGSTSGAKKPRLIASQTTTNSHTSTSNTTPPRSFDTSSSHQDASFKEKLPGQIRAPAVFKCVRVTSVDDGQDEYAYQAVVRIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGGGSGSGGSGGGGGGGRNGVSSSSPMLDPSDVYAASGGGLLGGSTYGNPIN* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0437 394 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 168 210 IPR006510 -
Dod08g0437 394 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 280 327 IPR006511 -
Dod08g0437 394 MobiDBLite consensus disorder prediction 47 72 - -
Dod08g0437 394 Pfam Domain of unknown function (DUF702) 166 328 - -
Dod08g0437 394 MobiDBLite consensus disorder prediction 343 374 - -
Dod08g0437 394 MobiDBLite consensus disorder prediction 137 165 - -
Dod08g0437 394 MobiDBLite consensus disorder prediction 225 280 - -
Dod08g0437 394 MobiDBLite consensus disorder prediction 225 276 - -
Dod08g0437 394 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 30 394 IPR007818 GO:0003700|GO:0006355
Dod08g0437 394 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 30 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0437 Dod-Chr8 4768901 4771644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0437 15 375 C2H2 Transcription Factor Family AT5G12330 50.802 7.56e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dod08g0437 DUF702 1.4e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0437 - - jre:108994634 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0437 08 4768901 4771644 Dod08g0437 08 4768901 4771644 ECH