Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0426 ATGGCTTTCTTTAGGAACTTTCTAAGTGATAATGTCTCACACAGTGTCATTGAAGATAAAGACCAAGGACAGAATGGTGATAGAGTACGTAGATCAGTAGGTAACGAGTCTGCTGATGCAACTTCCAGTGAGAAGGAGTTTGATATGAACATGGATGCACAGTATCAGAGTGATGGTGAACCAGATGGTGCTAATAGGCTGCAAAATGAAGCAACAGCTGATGATGGTGTTGCTACGAGAGAATCAAACTTACACACCACTGGTAGTAAAACAGCTATGGTCGGACGGTGGGGATCGACATTTTGGAAGGACTGCCGGCCTATGCACCCTCAGAATGGTTCTGACTCTGGGCAGGAATCAAAAAGTGGATCAGACTATAGAAATGCAGATGGGTCTGAAGATAATTCGTTGGATGGAAGAGGGGAAAGATTAGACTCGGAAGATGATGATGGACAAAAGGATGCTGGAAAAGGTCCAAGAGGCCATTCTGATGTTCCTGCTGAGGAAATGTTGTCTGATGAATACTATGAGCAGGATGGGGAAGAGCAGAGTGACTCATTGCATTACAGAGGGACTCATAAAGCAACCGGATCAAATTCGTGGCCTCAACGGATGTCTAATAAACGGATGTCTAATATTGGCGGTAACACTGGGAGTAGAAAATCTAAGATTTCAGATGATGATGATGATGGTGGTGATGATGATGAGGGTGATGCTGATTATGAAGAGGAGGATGAAGCAGATGAAGATGATCCCGATGATGCAGACTTTGAGCCTGCCTCAAGTGGTCATGCTGCAAACAAGGATAAAGATTGGGAAGGTGAAGGCTCTGATCAAGATGATGATAGTGATGTAAATCTAGATGTCTCAGATGATGATGATGATTCTTACTATGCAAAAAAACCCAAGGGGAGGGTACGAGGTAAAGCTGGGCGAAGCATAAAATCTAATAGAGATCGCAAAACATATGCAACATCTGGTCGACAAAGAAGAGTTAAATCATCTTTTGAAGATGATGAGTCAACAGCAGATGATTCTGACAGTGATAGTGATGTGGATTTCAAAAACATAAAAAAGAGAGTTCATGTCCGCAAGAATAATGGTCGCTCTTCTGCAGCCACTAGTTTCTCTTTGCGCAACAGCGAGGTTCGCACGTCTAGTCGGACAGTTAGGAAGGTATCATATGTTGAAAGTGAGGAAAGTGAGGAAGTTGATGAAGGGAAAAAGAAAAAGTCCCAAAAGGAAGAAATAGAAGAGGATGACGGTGACTCCATTGAAAGGGTGCTTTGGCATCAGCCAAAGGGCATGGCGGAAGATGCTCAAAGGAATAATAGATCCACAGAGCCTGTTTTGATGAGTTACTTGTTTGATTCTGAAGTTGATTGGAATGAGATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTACAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTACACAAAGAAGATAATGGAGGACATCAGGTACAGGAGGACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGCAAAGATAATTCTGGCAATGTTATTCCCGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCAACTTGGGAAAAGGACATCGATATTGCATTTGCTCAACATGCTATTGATGAGTATAAGGCTCGTGAGGCTGCAATGTCGGTTCAAGGAAAGACGGTAGATTCCCAGCGAAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAAGAGCAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAGCTTGAGGGTCTAAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTCATTGTACCATTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAATGGCTTCCTGATATGAATATTATTGTATACGTTGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAATATGAATTTCATAATGATAAAAGGGCTGGTAGACCTATTAAATTCAATGCGCTGTTAACTACATATGAAGTAGTTTTGAAAGATAAGGCTGTTTTCTCGAAGATCAAGTGGAATTATTTGATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCACAGTTGTACACAACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGAACTCCTCTACAGAATAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTGACAAGTTCAGCAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTCTTTCAATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCTCACATACTACGGAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAGATTGAGCGGATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAATATTATAAGTGGATTTTGGAACGCAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAACATTGTTGTGGAGTTAAAGAAGTGCTGTAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGAAGTAGTGACAACAGTAAGCTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTTATACTTGACAAGCTACTTGTTAGATTGCATGAAACCAAACATCGTGTTCTTATTTTCTCCCAGATGGTCAGGATGTTGGATATACTGGCAGAGTATATGTCACTTCGCGGCTTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAACTGCGTCAGCAGGCAATGGATCACTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACCCGAGCAGGAGGTCTGGGTATCAACCTTGCCACAGCAGACACTGTCATAATATTTGATTCAGATTGGAATCCTCAAAATGATCTGCAGGCCATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGGTTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTCGACCACTTGGTGATACAAAAATTAAATGCAGAGGGCAGACTAGAGAAGAAAGAAGCCAAAAAAGGAAGTTTTTTTGACAAAAATGAGCTGTCCGCTATATTACGATTTGGAGCAGAGGAGCTTTTCAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATAGATGAAATTCTTGAAAGAGCGGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAACAAGGGAATGAGTTATTAAGCGCATTTAAGGTTGCCAATTTCTGTAATGATGAAGATGATGAAAGTTTTTGGAGTCGTTGGATTAAGCCTGATGCTATTGTCCAAGCAGAGGAAGCTCTCGCTCCACGTTCTGCAAGAAATATTAAAAGTTATGCAGAGGATAATCACTCTGAAAGAAGTAATAAAAGAAAAAAGAAGGAAGCTGAACCACCTGAACGAGCTCAGAAACGCCGGAAACCAGAGTACTCAGCTCCTGCAGTACCAATGATTGAGGGTGCATCTGCCCAAGTGAGAAGTTGGTCATATGGGAATTTATCTAAAAGAGATGCGCAACGTTTTTCTCGTTCAGTTATGAAATATGGCAATGAGAGCCAAATCGACTTGATTGTTGCTGAGGTTGGTGGTGCTGTTGGAGCAGCTCCACTTGAAACACAGAGTGAACTCTTCAATACTCTAATTGATGGCTGTACAGAAGCTGTGGAACTGGGAAGTCTGGATCCAAAGGGGCCTTTGCTGGATTTTTTTGGTGTTCCAGTGAAGGCGAATGATCTACTTGCCCGTGTCCAACAACTTCAACTCCTAGCAAAGCGCATTAGTCGGTATGAAGATCCAATTCAACAATTCCGTGTTTTAACATATCTCAAGCCTTCAAATTGGTCGAAAGGTTGTGGATGGAATCAAATCGATGATGCAAGATTGCTTCTTGGAATACATTATCATGGATTTGGTAATTGGGAAAAGATCAGATTAGATGAAAGGCTTGGCCTTACTAAGAAAATTGCACCAGGAGAACTTCAACACCATGAAACTTTCTTGCCTCGGGCTCCGAATTTGAGAGACCGTGCAAATGCCCTTTTGGAGCAAGAACTTGCTGTTCTTGGTGTAAAAAATGCCAATAGTAGGGTTGGCCGGAAGCCTTCCAAGAAAGAGAGAGAAAATATGATGAACATGTCGATGTTGCGTGGACCAGAGAAGAAAAAAAAGGGTTCTGTTAATGTCCAAATGAGAAAAGATAGACTTCAGAGACCGCAAAAGGTTGAACCTATAGTAAAAGAGGAGGGTGAAATGTCAGACGATGAGGAAGTATATGAGCAGTTCAAGGAGGTAAAGTGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACCTTGAAACGTCTTCACAGGTTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTTCTTTCAAAAATACGCAACTATTTACAACTTCTTGGGCGAAGGATAGATCAAATTGTTATAGAACATGAAGCGGAGCCGTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATATGTCTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCGTCAAATATATTCCAAACTTAAACAGGAGCAAGAAGTTGAGGCAGGCATTGGTCCCTCTCATGTCAATGGTACTGTATCTGTTTCATTTAGCAGAAATGGAAACCCATTCAATCGCAACATGGAGAGGCCGAGAGGATTCAAAAATATTACTACCTACCAAATGCCAGAGCCAGTTAATAATACAGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAGGTGATGATCTTTTCCAGGGTCATCCACCACCTCAAAGAACCATGAATAGTGCTATCCGGATTTCTGATCCTAGTGAACTTGGGATCCTTGGGGCTGGACCATCCGACAAACGTTTTGTCAGTGAGAAACCTTATAGGGCCCAATCTGGTGGGTTTCCTCCAAGGTAA 5256 0.4159 MAFFRNFLSDNVSHSVIEDKDQGQNGDRVRRSVGNESADATSSEKEFDMNMDAQYQSDGEPDGANRLQNEATADDGVATRESNLHTTGSKTAMVGRWGSTFWKDCRPMHPQNGSDSGQESKSGSDYRNADGSEDNSLDGRGERLDSEDDDGQKDAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYRGTHKATGSNSWPQRMSNKRMSNIGGNTGSRKSKISDDDDDGGDDDEGDADYEEEDEADEDDPDDADFEPASSGHAANKDKDWEGEGSDQDDDSDVNLDVSDDDDDSYYAKKPKGRVRGKAGRSIKSNRDRKTYATSGRQRRVKSSFEDDESTADDSDSDSDVDFKNIKKRVHVRKNNGRSSAATSFSLRNSEVRTSSRTVRKVSYVESEESEEVDEGKKKKSQKEEIEEDDGDSIERVLWHQPKGMAEDAQRNNRSTEPVLMSYLFDSEVDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMSVQGKTVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVIVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFHNDKRAGRPIKFNALLTTYEVVLKDKAVFSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFSSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGSFFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEAEGEQGNELLSAFKVANFCNDEDDESFWSRWIKPDAIVQAEEALAPRSARNIKSYAEDNHSERSNKRKKKEAEPPERAQKRRKPEYSAPAVPMIEGASAQVRSWSYGNLSKRDAQRFSRSVMKYGNESQIDLIVAEVGGAVGAAPLETQSELFNTLIDGCTEAVELGSLDPKGPLLDFFGVPVKANDLLARVQQLQLLAKRISRYEDPIQQFRVLTYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLTKKIAPGELQHHETFLPRAPNLRDRANALLEQELAVLGVKNANSRVGRKPSKKERENMMNMSMLRGPEKKKKGSVNVQMRKDRLQRPQKVEPIVKEEGEMSDDEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVIEHEAEPYKQDRMTVRLWKYVSTFSHLSGERLRQIYSKLKQEQEVEAGIGPSHVNGTVSVSFSRNGNPFNRNMERPRGFKNITTYQMPEPVNNTGKSEAWKRRRRAEGDDLFQGHPPPQRTMNSAIRISDPSELGILGAGPSDKRFVSEKPYRAQSGGFPPR* 1752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0426 1751 MobiDBLite consensus disorder prediction 275 292 - -
Dod08g0426 1751 ProSiteProfiles Chromo and chromo shadow domain profile. 536 600 IPR000953 -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 1211 1250 - -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 14 425 - -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 312 339 - -
Dod08g0426 1751 Gene3D - 538 590 - -
Dod08g0426 1751 Pfam Helicase conserved C-terminal domain 945 1058 IPR001650 -
Dod08g0426 1751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 948 1099 IPR001650 -
Dod08g0426 1751 SUPERFAMILY Chromo domain-like 420 503 IPR016197 -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 1685 1700 - -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 111 125 - -
Dod08g0426 1751 Gene3D - 409 536 - -
Dod08g0426 1751 Coils Coil 1141 1161 - -
Dod08g0426 1751 Gene3D - 1354 1468 - -
Dod08g0426 1751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 1133 IPR027417 -
Dod08g0426 1751 SMART DUF4208_2 1523 1628 IPR025260 -
Dod08g0426 1751 SMART helicmild6 974 1058 IPR001650 -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 367 392 - -
Dod08g0426 1751 ProSiteProfiles Chromo and chromo shadow domain profile. 423 511 IPR000953 -
Dod08g0426 1751 Pfam Chromo (CHRromatin Organisation MOdifier) domain 537 591 IPR023780 -
Dod08g0426 1751 Pfam SNF2-related domain 647 916 IPR000330 GO:0005524|GO:0140658
Dod08g0426 1751 Gene3D - 859 1089 IPR027417 -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 393 425 - -
Dod08g0426 1751 CDD CD2_tandem 534 590 - -
Dod08g0426 1751 Coils Coil 1088 1108 - -
Dod08g0426 1751 Gene3D - 619 858 IPR038718 -
Dod08g0426 1751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 640 812 IPR014001 -
Dod08g0426 1751 CDD CD1_tandem 421 501 - -
Dod08g0426 1751 SMART ultradead3 624 823 IPR014001 -
Dod08g0426 1751 SMART chromo_7 534 593 IPR000953 -
Dod08g0426 1751 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1662 - -
Dod08g0426 1751 SUPERFAMILY Chromo domain-like 515 591 IPR016197 -
Dod08g0426 1751 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1662 - -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 126 169 - -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 1674 1751 - -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 190 220 - -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 75 94 - -
Dod08g0426 1751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 849 IPR027417 -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 1215 1246 - -
Dod08g0426 1751 MobiDBLite consensus disorder prediction 228 256 - -
Dod08g0426 1751 CDD SF2_C_SNF 934 1069 - -
Dod08g0426 1751 Pfam Domain of unknown function (DUF4208) 1535 1627 IPR025260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0426 Dod-Chr8 4623970 4639165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0426 650 1085 RAD5 or RAD16-like Gene Family AT1G02670 25.743 5.62e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod08g0426 SNF2_N 9.3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0426 K11367 - gmx:100808039 2936.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0426 08 4623970 4639165 Dod08g0426 08 4623970 4639165 ECH