Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0423 ATGCTAACCACAATCCTCAGAAGAACAACTTCTTCTTCCATCGTCTCAAGGCGCGTTCTCGCCGCCGCCATAAGCTCAACCGACCCATTCCTCCACCGCCCCACCTCTTCTATTTCTTCTTCCGCCGCCTCAAAATCCAACGGCGATCCTCACGGCGGTGGTGGCGAGTTCCGAGTATTTTCCAGCGTGTTAGGGTTCAGGGCATTTCACTCTAATCAGGGACCATTGAGTTTCCGCTCCTCGTTGTGTTCTCGTGTGGAGTATGCAGTGGAGGAATACCAGTACGAAGAAGCTTCCAAAGGGAACAAAGCTGATGACGAAGGACTTGAGATCGCGAAGCTTGGGATTTCTCAGGAGATTGTCTCTGCTCTCGCAAAGAAAGGCATCGCCAAACTCTTCCCAATTCAGAAAGCTGTACTGGAACCTGCTATGCAAGGACGTGATATGATGGGTCGAGCTAGAACAGGAACGGGGAAGACTCTTGCTTTTGGGATACCAATCATGGATAAGATTATTCAGTTCAATGCCAAGCATGGACGCGGAAGGTATCCTTTGGCTTTGGTTTTGGCTCCTACCAGAGAGCTTGCGAAGCAGGTTGAGAAAGAATTCTATGATGCGGCGCCTAGCTTGGATACCATCTGTGTCTATGGGGGTACGCCCATCTCTAGTCAGATGAGGCAGCTTGATTATGGTGTTGATATTGCAGTTGGCACACCTGGTCGAATCATTGACCTTCTCAACAGAGGTGCTCTGAATTTGAATGAGGTTCAGTATGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTCGGCTTTCAGGAAGATGTTGAAAAGATCTTGGAGAGGTTGCCCCCTAACCGTCAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAGATTACGCGGAATTACCTAAAAGATCCCCTAATCATTGATCTTGTTGGTGAATCTGATCAGAAGTTGGCAGATGGAATTTCACTGTATTCAATTGGAAGTGATATGTATGTTAAAGCGGGAATTCTTGGACCTCTAATCACAGAACATGCAAAAGGAGGGAAGTGTATTGTTTTTACTCAAACCAAACGTGATGCTGATCGATTATCACATAGTCTGGCAAAAAGTCTTCAGTGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAACGGCCATTTTAATGTTTTGGTAGCAACTGATGTTGCTTCACGAGGGCTTGATATACCAAATGTGGATCTTGTAATACATTATGATCTTCCCAATTCTTCAGAGATATTTGTTCATCGATCCGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTTTATACAGACGATCAATCCAGGGCTGTTAAGACTATTGAGCGTGATGTAGGCTGTAGATTTTCAGAGCTACCGAGGATTGCTGTTGATAGAGAATCAGTGGACACATTTGGTGGCATGGGTGGTGGGCGATATGGTTCTTTTGGAGGTGTGAGGGATCGTCGATCTGGTGACACAGGTTTTGGTCGCAGTCCTGGATTTAGTCGGCCCGGGGGATACGGTAACCCTGGATCTGGCCGCTCTAGCTATGGAAATTCTGGTGAAAGGTTTGGTGGACCAAATTCTAGTCGTATTGGTGGCTTTGGGAGTCCATCCAGAGGGGGATTTTCTGGTGATTCATCTGGTGAAATGAGTAGATATGGTGGATCAGGCTCTGGTCGTTCCTCTGGTGGCTTTGGTTCAGGTCAATCAGGAAGTAGATCTGGCGGTTTTGGTGGTTCAGGTCGCTCTGGGGGTTTTGGTGGTTCTGATCGCTCTGGTGGTTTTGGTGGCTCAAATCGTTCTGGTAGTTTTGGAGGTTTTGGCTCAAGTTAA 1899 0.4687 MLTTILRRTTSSSIVSRRVLAAAISSTDPFLHRPTSSISSSAASKSNGDPHGGGGEFRVFSSVLGFRAFHSNQGPLSFRSSLCSRVEYAVEEYQYEEASKGNKADDEGLEIAKLGISQEIVSALAKKGIAKLFPIQKAVLEPAMQGRDMMGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRYPLALVLAPTRELAKQVEKEFYDAAPSLDTICVYGGTPISSQMRQLDYGVDIAVGTPGRIIDLLNRGALNLNEVQYVVLDEADQMLQVGFQEDVEKILERLPPNRQTLMFSATMPSWIKQITRNYLKDPLIIDLVGESDQKLADGISLYSIGSDMYVKAGILGPLITEHAKGGKCIVFTQTKRDADRLSHSLAKSLQCEALHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTDDQSRAVKTIERDVGCRFSELPRIAVDRESVDTFGGMGGGRYGSFGGVRDRRSGDTGFGRSPGFSRPGGYGNPGSGRSSYGNSGERFGGPNSSRIGGFGSPSRGGFSGDSSGEMSRYGGSGSGRSSGGFGSGQSGSRSGGFGGSGRSGGFGGSDRSGGFGGSNRSGSFGGFGSS* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0423 632 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 543 - -
Dod08g0423 632 SMART helicmild6 368 448 IPR001650 -
Dod08g0423 632 MobiDBLite consensus disorder prediction 616 632 - -
Dod08g0423 632 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 54 543 - -
Dod08g0423 632 MobiDBLite consensus disorder prediction 562 599 - -
Dod08g0423 632 MobiDBLite consensus disorder prediction 32 51 - -
Dod08g0423 632 Pfam DEAD/DEAH box helicase 133 302 IPR011545 GO:0003676|GO:0005524
Dod08g0423 632 Gene3D - 337 491 IPR027417 -
Dod08g0423 632 SMART ultradead3 128 331 IPR014001 -
Dod08g0423 632 CDD DEADc 120 315 - -
Dod08g0423 632 MobiDBLite consensus disorder prediction 32 47 - -
Dod08g0423 632 MobiDBLite consensus disorder prediction 533 547 - -
Dod08g0423 632 CDD SF2_C_DEAD 340 457 - -
Dod08g0423 632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 487 IPR001650 -
Dod08g0423 632 Gene3D - 110 318 IPR027417 -
Dod08g0423 632 MobiDBLite consensus disorder prediction 500 632 - -
Dod08g0423 632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 314 IPR014001 -
Dod08g0423 632 Pfam Helicase conserved C-terminal domain 346 448 IPR001650 -
Dod08g0423 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 468 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0423 Dod-Chr8 4585877 4591083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0423 114 480 Eukaryotic Initiation Factors Gene Family AT3G19760 31.806 5.44e-64 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0423 - - ahf:112702088 862.448