Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0419 ATGAAGCTTTCTTCTTCTGGGTTTAACCAACCGGCTGAAGAAGAAGGGGAGAAGAAAAGTTTGAATTCTGAACTATGGCATGCATGTGCTGGTCCGCTGGTTTCTCTACCACCAGTTGGAAGTCGTGTAGTATACTTCCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAATAGGGAAGCAGATGCACATATTCCTAATTATCCTAACTTGCCTCCACAGCTTATTTGTCAGCTTCACAATGTGACGATGCATGCAGATGCTGAAACAGATGAGGTATATGCTCAAATGACTCTGCAACCTCTAACTCCACAAGAGCAAAAGGATGTGTATCTACTTCCTGCTGAATTGGGTACTCCCAGCAAACAACCAACCAACTACTTCTGTAAAACACTGACTGCTAGTGATACCAGCACTCATGGAGGATTTTCAGTTCCTCGAAGAGCAGCTGAAAAAGTCTTTCCTCCTCTTGATTACTCACATCAGCCTCCTGCTCAAGAACTGATTGCTAGAGATCTGCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTCACTACAGGGTGGAGTGTCTTTGTTAGTGCTAAGAGGCTTGTAGCTGGTGATTCAGTCCTTTTCATCTGGAATGATAAAAATCAGTTACTCTTGGGTATACGGCGAGCAAATCGTCCGCAGACTGTCATGCCATCATCGGTTCTGTCAAGTGATAGCATGCACATTGGTCTCCTTGCTGCTGCAGCTCATGCAGCTGCCACAAATAGCCGCTTCACTATATTCTATAATCCTAGGGCAAGCCCATCGGAATTTGTCATCTCCTTGGCCAAGTACGTTAAAGCAGTGTATCATACACGAGTTTCTGTTGGTATGCGATTTAGGATGCTTTTTGAGACAGAAGAGTCAAGTGTGCGTCGCTACATGGGTACTATAACAGGTATTAGTGATTTAGATCCTGTCCGCTGGCCAAATTCATACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCTACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTGAGGTTGAGGCGCCCTTGGCCATCAGGGCTACCTTCTTTGTATGGTCTCAAGGATGGTGACATGGGCATTGGTTCTCCATTCATGTGGCTCCATGGTGGGCTTGGGGATCAAGGAATGCAATCTGTGAACTTCCAGGGGCTTGGCATTACACCATGGATGCAACCAAGACTTGATGCCTCCATGCCGGGACTCCAACCAGAGATATACCAGGCAATGACTTCTGCTGCATTCCAGGAGATGAGGACAATGGATCGTTCAAAATCTTCAGCCCAACCTCTGTTGCAGTTTCAGCAGAATTCAAATGTTCCTTCTGCTTATGTGTCTGAATTACAGAGACAAGTGTTGCCACAGTCTCAGCCCCAGAATACCCTTCTACACAGTTTCCAAGAAAACCAAGCACCTGCTCAATCACAAGTTTTGCAACAACAGTTGCATCGATACCACCCATATAGTGATCAGCGGCAACAGCAGCAGCAACTTAAAAACTTGCCTGTTCAGCAGCAGTTACCAAATGTCATCTCTCCTTTGTCTAATTTTGCATCAGCTACCCAGTCTCAATCTCCTTCCATGCAAGCCTTAGCTTCACACTGTCAGCAGCAGAGCTTTCCTGAGTCCATCAGGAATCATATTTCCAGCTCTGATGTTTCCCCAATCCACAGTCTACTAGGTTCATTCTCCCAGGATGGAGCATCTCAGTTACTTAACTTGAATGGATCCAATGCAGTCATGTCGACTGGGGCCTTGCTACCCAAGCAAGTAACTGTTGACCCTCAGCTACCCACTGCTTCTGCTCAGTGTGTATTGCCTCAGGTGGAAAATCTGGGAACATCACAATCAAATGCGTCTGAACTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCAAGGTGCAGCTGATCCTCAGAGTAATCTTTTGTTTGGGATAAACATTGATCCTTCTTCTCTTATGCTGCAAAATGGCATGCCAAACCTGAGAAATATAGGCAATGTGAATGATTCCTTGTCATTGCCATTTTCTGCTTCAAATTGTGGTGGTAGTGCTACTACAGGCACTGATTTCCCTCTAAGTTCAACCATGACAACCTCAAGTTGTGTGGATGAATCTGGATACTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATGCACCGACTGGAACCTTTGTCAAGGTTCACAAGTCAGGGTCCTTTGGCAGGTCACTGGACATGTCCAAGTTCTGCAGCTATGATGAGCTGCGCAGTGAACTTGCTCGCTTGTTTGGCCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCAGGAGAATGATATTCTCCTTCTTGGTGATGATCCCTGGCAGTAA 2493 0.4601 MKLSSSGFNQPAEEEGEKKSLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREADAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLTPQEQKDVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSHQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVISLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSYWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGDMGIGSPFMWLHGGLGDQGMQSVNFQGLGITPWMQPRLDASMPGLQPEIYQAMTSAAFQEMRTMDRSKSSAQPLLQFQQNSNVPSAYVSELQRQVLPQSQPQNTLLHSFQENQAPAQSQVLQQQLHRYHPYSDQRQQQQQLKNLPVQQQLPNVISPLSNFASATQSQSPSMQALASHCQQQSFPESIRNHISSSDVSPIHSLLGSFSQDGASQLLNLNGSNAVMSTGALLPKQVTVDPQLPTASAQCVLPQVENLGTSQSNASELAALPPFPGREHSAYQGAADPQSNLLFGINIDPSSLMLQNGMPNLRNIGNVNDSLSLPFSASNCGGSATTGTDFPLSSTMTTSSCVDESGYLQSSENVDQANAPTGTFVKVHKSGSFGRSLDMSKFCSYDELRSELARLFGLEGQLENPQRSGWQLVFVDQENDILLLGDDPWQ* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0419 830 Gene3D - 759 830 - -
Dod08g0419 830 Gene3D - 127 230 IPR015300 -
Dod08g0419 830 SUPERFAMILY CAD & PB1 domains 755 830 - -
Dod08g0419 830 CDD B3_DNA 128 229 IPR003340 GO:0003677
Dod08g0419 830 ProSiteProfiles PB1 domain profile. 762 830 IPR000270 GO:0005515
Dod08g0419 830 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Dod08g0419 830 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Dod08g0419 830 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 830 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod08g0419 830 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod08g0419 830 Gene3D - 293 365 - -
Dod08g0419 830 PANTHER AUXIN RESPONSE FACTOR 6 1 830 - -
Dod08g0419 830 SMART B3_2 129 231 IPR003340 GO:0003677
Dod08g0419 830 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0419 Dod-Chr8 4528472 4536308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0419 98 830 B3 DNA Binding Superfamily AT5G37020 53.930 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod08g0419 B3 6.1e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0419 08 4528472 4536308 Dod08g0419 08 4528472 4536308 ECH