Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0413 ATGAACAACAGTATCCCAGGTTGGAATTTTGAGAGCGATTCTTGTGTCCTCAATCAAAAGAACCCCATGTGGCCAGACCAAGAACTTGTGGAGCTCCTATGGCAAAATGGGCATGTAGTTTTCCAAAACCAAACACAAAGGAAACCAATTGAGAATTCATGTGACTCAAGAAAGGTTCAAAAAAATGATCCATCAACATTAAGGACTACTGAGACTTTTGGGAACTCAAGTAACTTGAGTCAACAAGATGATATAGTCTCATGGATCCAATACCCAGTAGAGGATCCATTGGAACATCAACTAAGTTCAAATCTATTATCTCAATTGGCACCTTGTGAAGTCGAGTCTTTCAAGCCAATCAAGCAATTGGAAGAGGGCAAGTTTGCCAAATTTGATGCCTCTAGCGCCCCCAATGCAACTTTAATAAGTTCACAACCACCTAATATGAGACCCTCCTCTAATCATATGCCTGCTCCAAGATTTCATCATGCTCCTGTTTCTTCATCTCAGAAGATCAATGACTTTGGTGGATCATCACAAAAGGCCCCAAAATTTCCTCACCTTTCAGCACCCCCTAATGGTTCTTCGGCATCCGCTAATGCACAGTTTAGGGAGAAAGTTAATGCTAATGTGTCACAAGGTGAGGCCAGAGAGTGCTCAGTGATGACAGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGAACAAGATGTTAGCAAGGTTTCAAGCAGTGGTGTTTGGGGTCCTACTTTCTCTGCTGAGCATGAAGCTGTCAGAGACTGCGTCCAGAGAACTGTTCCTTGGAGTGGTAAAGGAAAATCTTCAGAGATGCTTGAGCCAACTTTGACTTCATCTTCTGGTGGATCAGGCAGTAGTAGTCTTGGAAAAACTTGTTCATTATCAACAGGAAATCATGGCCTAAAGAGAAAAGCAACTGATGCAGATGAATTAGAAGAACAAAGTGAGGCCACAGAACCAAATTCAGCTGTTGGAAACGAGGCATCTCGGCGATCAGGTTCTTCAAGAAGGAGCCGTTCAACTGAAGTGCATAATTTATCAGAAAGGAGAAGAAGAGATAGGATCAATGAGAAGATGAAGACATTGCAGCAACTGATACCAAAGAGTAACAAGACAGACAAAGCATCAGTGTTAGAAGAGGCAATTGAATACATGAAATCACTTCAGTTACAGCTTCAGATAATGTGGATGGGGGCTGGCATGGCACCGGTGATGTTTCCAGGAATTCAGCATTACTTTCCACGAATGTGTATGGGAATTGCTGCACCTCCTATTCAACATCCAATGCAATTACCAAGAATGCCACTTGATCAATCTATGTCTGCGGCTCAGGCACAAAGCAAGGCTAGAATGTGCCAAAATCCAGTTCTGGGGGCGTTTAATTACCAAAATCAGATGCAGAATCCATGCCTTGCAGAGCAATATGCACGTTACATGATGGCTTATCATCATCTCATGCAAAGTGCCTCGCAGCCAATGAATGTATTTGGTTATGGTTCCCATGGTGTACATCCTAGTCAAACAATGATTGCACCTAGCAATGGCAGTGGACCCATGAGTGGAGCAGCTAATTTTGACGATGCTAATGCTATGAGTGGCAAAATGGGTAAACTACTTAGTACTTCATGTTGTTTCATATTAGGCTTACAACAACATATATGGATAACCCCTACCCCTTTAGCACTAGGGAGCCCAGTTGCGTCAAGTCGAATTAGTCGAGTTCTTGTTGACAGAGAAGAGTTTTCTTTAACACCTCAATTTTCTAGGTCACTATTGTATTTCACTTTCATTATTTTATTTTTAATAAATAGCCAAGGTATCATGAATGGAATCCTATATATGTTATCTTCCTTCTTCATATTCACTGCCTTTTTCTGCTTTCAGGTTCTTCCACCTTTTAACTGA 1929 0.4184 MNNSIPGWNFESDSCVLNQKNPMWPDQELVELLWQNGHVVFQNQTQRKPIENSCDSRKVQKNDPSTLRTTETFGNSSNLSQQDDIVSWIQYPVEDPLEHQLSSNLLSQLAPCEVESFKPIKQLEEGKFAKFDASSAPNATLISSQPPNMRPSSNHMPAPRFHHAPVSSSQKINDFGGSSQKAPKFPHLSAPPNGSSASANAQFREKVNANVSQGEARECSVMTVGSSHCGSNHIPQEQDVSKVSSSGVWGPTFSAEHEAVRDCVQRTVPWSGKGKSSEMLEPTLTSSSGGSGSSSLGKTCSLSTGNHGLKRKATDADELEEQSEATEPNSAVGNEASRRSGSSRRSRSTEVHNLSERRRRDRINEKMKTLQQLIPKSNKTDKASVLEEAIEYMKSLQLQLQIMWMGAGMAPVMFPGIQHYFPRMCMGIAAPPIQHPMQLPRMPLDQSMSAAQAQSKARMCQNPVLGAFNYQNQMQNPCLAEQYARYMMAYHHLMQSASQPMNVFGYGSHGVHPSQTMIAPSNGSGPMSGAANFDDANAMSGKMGKLLSTSCCFILGLQQHIWITPTPLALGSPVASSRISRVLVDREEFSLTPQFSRSLLYFTFIILFLINSQGIMNGILYMLSSFFIFTAFFCFQVLPPFN* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0413 642 Gene3D - 342 403 IPR036638 GO:0046983
Dod08g0413 642 MobiDBLite consensus disorder prediction 340 363 - -
Dod08g0413 642 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Dod08g0413 642 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Dod08g0413 642 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 524 IPR031066 -
Dod08g0413 642 CDD bHLH_AtPIF_like 349 410 - -
Dod08g0413 642 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 409 IPR036638 GO:0046983
Dod08g0413 642 MobiDBLite consensus disorder prediction 269 363 - -
Dod08g0413 642 MobiDBLite consensus disorder prediction 278 308 - -
Dod08g0413 642 PANTHER TRANSCRIPTION FACTOR PIF5 1 524 - -
Dod08g0413 642 MobiDBLite consensus disorder prediction 325 339 - -
Dod08g0413 642 MobiDBLite consensus disorder prediction 138 199 - -
Dod08g0413 642 MobiDBLite consensus disorder prediction 51 78 - -
Dod08g0413 642 SMART finulus 353 402 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0413 Dod-Chr8 4468353 4473059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0413 7 524 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 32.342 9.91e-51 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod08g0413 HLH 7.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0413 K16189 - gmx:100811777 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0413 08 4468353 4473059 Dod08g0413 08 4468353 4473059 ECH