Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0406 ATGAAAGTGAAGGCTCAGAAAACTAACAAAATGGAAAATTCTCAGAGAATTGGCGTAAGGCAGTACAACAAATCAGAGCTTCCACGCCTGCGGTGGACGTCTGAACTCCATGAACACTTTGTTGAAGCTGTTGAGAGTCTTGGTGGAAAACACAAGGCAACTCCAAAGCGAATTTTGCAGCAGATGCCTGTGACAGGATTGAAGATTGCTCACATCAAAAGCCATCTTCAGATGTACAGAAATTACGCGAAGGGACATGCCATCCTTGCACCAATGGATCAGTTGTTGGAAGGAAATGTACATTTTAACGACCTCAAAATTAGTTCCATTTGTTCACCAGAAAGATCATCGATGGGAACTACTTTCAGAGTATCAAATTATAAAAGCAAGGTTCTCAAGCAAGAACTTCATCTGTTAGACAGGAAAATTGGGCTTTCACAAACTAGTGAAGAAACTGATTATGATCTGAACCAGGAGCCCGAGTCAATCAGTGAAGGCTTGCGTCGTGATGATGTGTCAAATGAAGAAGAAGATAATAACAGGATAATTCATCAATTTCCTGGACCCTCATTCTCTTTTAACACGACGCCTAATTTGATATCGATGATGCATAGTGAGAGTGGCCAAGGTATGATGCGTTTTTCGTCATCAACTGCAGCTGATTCTGTGGATTCTAGTTCCGTACCATCTTGGGGAAACAATTATATAAACTTAGACTTAACAATATGA 729 0.406 MKVKAQKTNKMENSQRIGVRQYNKSELPRLRWTSELHEHFVEAVESLGGKHKATPKRILQQMPVTGLKIAHIKSHLQMYRNYAKGHAILAPMDQLLEGNVHFNDLKISSICSPERSSMGTTFRVSNYKSKVLKQELHLLDRKIGLSQTSEETDYDLNQEPESISEGLRRDDVSNEEEDNNRIIHQFPGPSFSFNTTPNLISMMHSESGQGMMRFSSSTAADSVDSSSVPSWGNNYINLDLTI* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0406 242 Pfam Myb-like DNA-binding domain 30 80 IPR001005 -
Dod08g0406 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 84 IPR017930 -
Dod08g0406 242 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 9 205 - -
Dod08g0406 242 MobiDBLite consensus disorder prediction 1 20 - -
Dod08g0406 242 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 205 IPR044848 GO:0003700
Dod08g0406 242 MobiDBLite consensus disorder prediction 150 176 - -
Dod08g0406 242 MobiDBLite consensus disorder prediction 162 176 - -
Dod08g0406 242 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Dod08g0406 242 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 28 81 IPR006447 GO:0003677
Dod08g0406 242 Gene3D - 27 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0406 Dod-Chr8 4387425 4391540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0406 18 80 G2-like Transcription Factor Family AT1G14600 65.079 1.08e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod08g0406 Myb_DNA-binding 2.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0406 - - aip:107608315 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0406 08 4387425 4391540 Dod08g0406 08 4387425 4391540 ECH