Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0357 ATGGACAAACATTCTGGGGATTCTGTGCCAGCTCATGGTGCTACAGGTCCATCTGAGATTTTGTCACGTAATGTAGCTAAAAAAGTGGGAAGCAGCGCATGGGGAATACCACGCCGGACTGATGCATTTCATGCTTTAAGTGATGCTAGCTTGTTTTCTAGTTCACTTCCTGTTCTTCACCTTGAAAAGCTAAATTTAACTGGTTCAGAGCATCATGATCAATCTTCTGATGATAACTTGCCAAGGTTAGACAAAGTTCACCAAGATGAGGGACAAGATGCACTTGAAGATATGAAAATCAAAGCAGCTGGAAACATGCTTCCTGATGATGAAGATGAGCTATTAGCTGGGATAATGGATGATTTTGACCTTAGTAGGCTGCCGAGCCAACTCGAGGATCTTGATGAGAATGATCTCTTTGGCAGTGTAGGAGGGTTTGAAATGGATTTTGAACCCCAGGATAGCCTTAATATTGATATGTCAAAGATAAGCTTATCTGGTGGAGTTCCTTCAAATGGTATTGGTCAGTATGCACTATCAAATGGTATGGGAACAGTGGCTGGGGAGCATCCTTACGGAGAACATCCATCAAGGACCTTGTTTGTGCGTAACATCAACAGTAATGTGGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGGGATATCAGAACATTGTACACTGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACGGCAATGCGTGCTTTGCAAAACAAGCCCTTGAGAAGAAGAAAACTTGATATCCATTTTTCAGTTCCTAAGGATAACCCCTCAGAAAAGGATATTAACCAAGGAACCCTTGTAGTGTTCAACTTGGATCCATCAGTATCAAATGATGACCTTCGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATCCGGGAAACACCACATAAAAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCTGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGTATCAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTCGAAACTTGATGCAACAACTGAGTCAAGAGCTGGAGCTAGATGAAGCTCGAACTTTCAGTCATCAAGTGGGTTCACCTATTGCAAGTTCTCCTCCTGGTAACTGGGCACAATTTGATAGTCCAGTTGAACATAATCCATTACGTTCTTTTAGCAAGTCCCCGGGTTTGAATTTTGCCAGCCCAATGAGTACGAACCATATGCCTGGATTGGCTGCAATTCTTTCACCACATGCATCAACCTCCGCAAAGATTGCACCAATTGGCAAAGACCCTGGAAGGACTAATAATGCAAATCAGATATTTGCAAGCCCTGGATCAACACAAGGAGCAGCTTTTCAGCATTCTGTGTCCTTTCCTGATCATAATGTAAATGGAAGTCCCAGGCCTATATCTACTCTTGGTGAATCAAATTCAAGTTTGTCAAGTATTGGAACACTGTCGGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCCGAGCATTCAAACACATCTGCTTGGTCTTCATCTTCTGTGGGGCTTCCATTTACTTCTAATGGACCAAGACAGGGTTTCCCAATTACTAGTCAGCACAGTTCTTTTCTTGGTTCTCACCCACACCACCATGTTGGTTCTGCTCCATCTGGCCTTCCTCTTGATAGGTATTTTAGCTACTTTCCTGAGTCACCCGAAACTTCGATCAAGAGCCCAGTTGTGTTTGAGAGTTTGAATCATTGTGATGGGAGTTTTTTGATGAACATGGGTTCTCGTGCATCTTTTGGAGTTGGTGTTGGCCTTTCAGGAAATACATCCGAAATTGGTTCACCTAATTTCAGAATGATGTCATTGCCTAGGCATGGTTCCATGTTCCTTGGAAATGGTTCATATTCTGGACCAGGAGCAACTGACACTGAGGGATTAGGTGAACGTGGTCGAAGTAGGCGACCTGACTATAGTGGGAACCAAATTGATAGCAAGAAGCAGTACCAGCTTGATCTGGACAAAATTATGAGCGGGGAAGATACAAGGACTACTTTAATGATTAAAAACATCCCCAACAAGTACACTTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACGGGGGAAGTTACGACTTTCTCTACTTGCCAATCGACTTTAAGAACAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTCGCTTCCCTGGCTTATGCACGGATCCAGGGAAAGGGTGCACTTGTGACACATTTCCAAAATTCAAGCCTAATGAATGAGGATAAACGGTGCCGGCCAATTCTCTTTCATTCGGAGGGCCAAGAGGTTGGTGACCAGGAACATTTCCTCTCAAGCAATTTGAATATATTCATTCGTCAACCAGATGGGTCTTATGCAGGTGATTTGTTGGAGAGCCCGAAGGGCAATTTTGATGAAAGCTAG 2562 0.4313 MDKHSGDSVPAHGATGPSEILSRNVAKKVGSSAWGIPRRTDAFHALSDASLFSSSLPVLHLEKLNLTGSEHHDQSSDDNLPRLDKVHQDEGQDALEDMKIKAAGNMLPDDEDELLAGIMDDFDLSRLPSQLEDLDENDLFGSVGGFEMDFEPQDSLNIDMSKISLSGGVPSNGIGQYALSNGMGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSVPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELELDEARTFSHQVGSPIASSPPGNWAQFDSPVEHNPLRSFSKSPGLNFASPMSTNHMPGLAAILSPHASTSAKIAPIGKDPGRTNNANQIFASPGSTQGAAFQHSVSFPDHNVNGSPRPISTLGESNSSLSSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGLPFTSNGPRQGFPITSQHSSFLGSHPHHHVGSAPSGLPLDRYFSYFPESPETSIKSPVVFESLNHCDGSFLMNMGSRASFGVGVGLSGNTSEIGSPNFRMMSLPRHGSMFLGNGSYSGPGATDTEGLGERGRSRRPDYSGNQIDSKKQYQLDLDKIMSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHGGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKRCRPILFHSEGQEVGDQEHFLSSNLNIFIRQPDGSYAGDLLESPKGNFDES* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0357 853 MobiDBLite consensus disorder prediction 649 676 - -
Dod08g0357 853 Pfam RNA recognition motif 2 697 793 IPR007201 -
Dod08g0357 853 MobiDBLite consensus disorder prediction 661 675 - -
Dod08g0357 853 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 271 IPR000504 GO:0003723
Dod08g0357 853 CDD RRM2_MEI2_like 282 352 - -
Dod08g0357 853 PANTHER PROTEIN MEI2-LIKE 2 11 849 - -
Dod08g0357 853 CDD RRM3_MEI2_like 700 785 IPR034454 -
Dod08g0357 853 PANTHER RNA RECOGNITION MOTIF-CONTAINING 11 849 - -
Dod08g0357 853 SUPERFAMILY RNA-binding domain, RBD 195 358 IPR035979 GO:0003676
Dod08g0357 853 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 264 IPR000504 GO:0003723
Dod08g0357 853 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 350 IPR000504 GO:0003723
Dod08g0357 853 SUPERFAMILY RNA-binding domain, RBD 699 783 IPR035979 GO:0003676
Dod08g0357 853 Gene3D - 186 281 IPR012677 -
Dod08g0357 853 MobiDBLite consensus disorder prediction 466 498 - -
Dod08g0357 853 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 356 IPR000504 GO:0003723
Dod08g0357 853 MobiDBLite consensus disorder prediction 1 22 - -
Dod08g0357 853 Gene3D - 282 380 IPR012677 -
Dod08g0357 853 CDD RRM1_MEI2_like 197 273 IPR034453 -
Dod08g0357 853 SMART rrm1_1 199 267 IPR000504 GO:0003723
Dod08g0357 853 SMART rrm1_1 284 352 IPR000504 GO:0003723
Dod08g0357 853 SMART rrm1_1 699 775 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0357 Dod-Chr8 3857079 3864780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0357 193 508 Eukaryotic Initiation Factors Gene Family AT3G16380 23.919 6.69e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0357 - - gmx:100812324 1416.75