Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0345 ATGTTCATGATTCCAGCTGCTGCTATGGAGGTTCAGAATTTTAATCAAGAGGCAGCAGAAGAAGGGTCTTCTTCTCATCTGAAGAAGACGGGGAGAGGGAAGATAGAAATCAAGCGGATCGAGAACACAACCAACAGGCAAGTGACCTTCTGCAAGCGCAGAAACGGGTTGCTGAAGAAAGCCTATGAACTTTCTGTCCTCTGTGATGCTGAAGTTGCTCTAGTTGTCTTCTCTAGCCGTGGCCGCCTCTATGAGTACGCCAACAACAGTGTTAGAGGAACTATCGAAAGGTATAAGAAAGCATGTGCTGCTTCCACAAATGCAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAAGAATCATCCAAATTAAAAAGACAGATTCGAGACATTCAGAATCTAAATAGGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTTAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTCTAAGCAGAGTTAGATCTAGAAAGCATGAAACGTTGTTTGCTGATATCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAATAATTATCTGAGAGCTAAGATAGCTGAACATGAGAGAGCACAACAACAACAGCAACAGCAACCGGATTTGATGCAGGGAAATATGTGTGAGTCCATACCTTCACAGTCATATGACCGGAATTTCTTCCCTGTGAATCTCTTAGATTCCAGTAATCAATATTCACGCCAAGACCAGACTACTGCTCTCCAACTTGTCTGA 777 0.426 MFMIPAAAMEVQNFNQEAAEEGSSSHLKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKACAASTNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQQPDLMQGNMCESIPSQSYDRNFFPVNLLDSSNQYSRQDQTTALQLV* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0345 258 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Dod08g0345 258 PRINTS MADS domain signature 67 88 IPR002100 GO:0003677|GO:0046983
Dod08g0345 258 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Dod08g0345 258 SUPERFAMILY SRF-like 31 107 IPR036879 GO:0003677|GO:0046983
Dod08g0345 258 Coils Coil 150 170 - -
Dod08g0345 258 ProSiteProfiles K-box domain profile. 116 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod08g0345 258 MobiDBLite consensus disorder prediction 205 223 - -
Dod08g0345 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 86 IPR002100 GO:0003677|GO:0046983
Dod08g0345 258 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 21 247 - -
Dod08g0345 258 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
Dod08g0345 258 ProSiteProfiles MADS-box domain profile. 30 90 IPR002100 GO:0003677|GO:0046983
Dod08g0345 258 Coils Coil 119 139 - -
Dod08g0345 258 Coils Coil 189 213 - -
Dod08g0345 258 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 247 - -
Dod08g0345 258 Pfam K-box region 114 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod08g0345 258 CDD MADS_MEF2_like 31 105 IPR033896 GO:0000977|GO:0045944
Dod08g0345 258 ProSitePatterns MADS-box domain signature. 32 86 IPR002100 GO:0003677|GO:0046983
Dod08g0345 258 Gene3D - 42 112 IPR036879 GO:0003677|GO:0046983
Dod08g0345 258 MobiDBLite consensus disorder prediction 203 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0345 Dod-Chr8 3760716 3767531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0345 18 258 MADS-box Gene Family AT3G58780 69.600 3.33e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod08g0345 K-box 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0345 K09264 - gmx:100792224 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0302 05 3807347 3816231 Dod08g0345 08 3760716 3767531 PCT